Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1024 ATGGAAGAAGCTCAGGGAAGTTCGAGTTCCTTGCCTCCTTTTTTGGCGAAGACTTATGAGATGGTGGAGGATCCTTCCTCGGATTCCATTGTTTCTTGGAGTGCCAATAATAAAAGTTTCGTAGTTTGGGATCCAACAGAATTTGCGAGGGATTTGCTTCCAAAATTCTTCAAGCACAATAATTTCTCAAGTTTTATCAGACAGTTGAACACTTATGGATTTAGAAAAATTGACCCAGAAAGGTGGGAATTTGCTAATGATGATTTTATGAGGGGTCAACCTCATCTTTTGAAGAATATTCATAGACGAAAACCAGTTCATAGCCATTCTATACAGAATCTTCAGGGACCGGGAGCTTCTCCATTAACGGAATCAGAAAGGAAGAGTTTAAACGATGAAATAGGGAGGCTTAAACACGATAGAGAACGACTTGTTCTAGAGTTACAGAGATATGAACAGGAGTGGAAAACATGTGAGATACAAATACTTGGCTCAAAAGATCGTGTGGAAAGATTGGAAAAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTGGAGTGTTGCAGAAACCTGGGGTTGCTTTAAATCTCTTGACACTTTCAGAATCCATGGATAGAAAACGAAGGTTGCCAGGAGGTGGGTTCTTTTGTGAAGAAGCTAGCATTGAAGATCCTATGGAAACTTCACAAATGCCTCTAAGAGAAAATGTAGAGAGTACCTCTGTTCTGACATCCAATATGGAGCGATTGGATCAATTGGAGACCTCTCTGTTATTTTGGGAGAATATTGCACATGAAATTGATGACAGCTTCATTCAAAGTCATTCAAACTTGGACTTCGATGAATCCACAAGTTGTCCTGATAGTCCATCTATATCGTGCGTGCAACTAGATGTTGAAATGCAGCCTAAGCCATCTGGAATTGACATGAACTCTGAGCCTGCTGCATCTGCTGTTCCTGAGCCTGTTACATCTAAAGAACAACCTGTGGGAACGACCACTGTGGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCATCGGAGATGCAAGAAGCACAGTCAGAAACAAGGGATTCTGATGCCAGAAAAAATGAAGGAAAGCCTAGTGATCAAAATAAATTTTGGTGGAGTATGCGAAATGTAAATAATCTTCCAGAACAGATAGGGCATCTTAGTCAAGCAGAGAAAACTTAA 1215 0.4049 MEEAQGSSSSLPPFLAKTYEMVEDPSSDSIVSWSANNKSFVVWDPTEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPERWEFANDDFMRGQPHLLKNIHRRKPVHSHSIQNLQGPGASPLTESERKSLNDEIGRLKHDRERLVLELQRYEQEWKTCEIQILGSKDRVERLEKKQQKMVSSVSGVLQKPGVALNLLTLSESMDRKRRLPGGGFFCEEASIEDPMETSQMPLRENVESTSVLTSNMERLDQLETSLLFWENIAHEIDDSFIQSHSNLDFDESTSCPDSPSISCVQLDVEMQPKPSGIDMNSEPAASAVPEPVTSKEQPVGTTTVATGVNDVFWEQFLTENPGSSEMQEAQSETRDSDARKNEGKPSDQNKFWWSMRNVNNLPEQIGHLSQAEKT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1024 404 MobiDBLite consensus disorder prediction 109 125 - -
Bisa04g1024 404 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Bisa04g1024 404 Gene3D - 6 104 IPR036388 -
Bisa04g1024 404 MobiDBLite consensus disorder prediction 360 376 - -
Bisa04g1024 404 MobiDBLite consensus disorder prediction 107 129 - -
Bisa04g1024 404 Coils Coil 127 154 - -
Bisa04g1024 404 MobiDBLite consensus disorder prediction 302 329 - -
Bisa04g1024 404 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa04g1024 404 FunFam Heat shock transcription factor 1 7 104 - -
Bisa04g1024 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 317 IPR027725 -
Bisa04g1024 404 MobiDBLite consensus disorder prediction 348 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1024 Bisa-ChrBisa04 25372807 25374128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1024 7 404 HSF AT4G18880 50.735 1.30e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bisa04g1024 HSF_DNA-bind 5.3e-33 CL0123