Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1000 ATGGCTTTCCCAAACCAGCCCATGTCAGATTCATCTCCCCAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGCCAAGTCACCTTCTGTAAGCGCAGAAACGGCCTCCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCACCCGTGGCCGCCTCTATGAATATGCCAATAACAGTGTGAAAGCAACTATTGAAAGGTACAAGAAAGCATGTTCAAATACTTCTGGTAGTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGTGCTCAAATTAGTAACCTGCGGAATAACAACAGGCAAATGATGGGTGAGACTTTGGCCAGTTTGAATACCAAAGATCTTAAAAACTTGGAGTCAAAGTTAGAAAAAGGGATTAGCAAAATCCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAGATAGACTTGCACAATAACAACCAGATTCTTCGAGCCAAGATAGCTGAAAGTGAGAGGAGCCAGCAACAGCAGCAGCAGCAGCATAACATGAATGCGATGGGTGGAGGAACAAACTATGAAGGCATGCAGTCTCATCAACAATTTGAGTCGCGAGGCTTCTTCCAAGTCACTGGTTTACAACCCACCAATCACTATGCTCCTCACGACCACATGTCCCTCCAATTAGTATGTAGAATGATGGCCATGGGTGATAAGTGA 777 0.4453 MAFPNQPMSDSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSNTSGSGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLASLNTKDLKNLESKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQILRAKIAESERSQQQQQQQHNMNAMGGGTNYEGMQSHQQFESRGFFQVTGLQPTNHYAPHDHMSLQLVCRMMAMGDK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1000 258 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Bisa04g1000 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 200 - -
Bisa04g1000 258 MobiDBLite consensus disorder prediction 189 212 - -
Bisa04g1000 258 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1000 258 Coils Coil 140 160 - -
Bisa04g1000 258 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 Coils Coil 103 130 - -
Bisa04g1000 258 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Bisa04g1000 258 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1000 258 MobiDBLite consensus disorder prediction 1 21 - -
Bisa04g1000 258 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Bisa04g1000 258 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 Coils Coil 180 200 - -
Bisa04g1000 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Bisa04g1000 258 FunFam agamous-like MADS-box protein AGL11 29 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1000 Bisa-ChrBisa04 24263916 24277557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1000 10 249 MADS-box Gene Family AT3G58780 64.198 1.69e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa04g1000 K-box 1.2e-27 No_clan