Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0886 ATGGCGAAGGGAGCCACGAGGTCTCGGAGGAGGTCTCGGAAGAGGTCTCTCCCATCGCCTTCTGCTTCTTCGGCTTCAGATAAACGCTCCACAAGACATTCTAATGGCCGAATAGTGTTGAGGGTAAAATCTAATGAGGCGAAGAAGAGATCTGCCCAGAAGACTAATTCAGGAAAGAAACCCAAAGCAAAGCAAAAGAAGAATAACAAAAAATTTGATTCTAAGAAGCCAAAGAAACCCCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAGAGAATTTCAGGAGCAGAATCCAGATGTCAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAAGTTCAATACTATGATATAGCCACAGAAAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACAAGAAAATGGAAAGCGGGGAATTCGGAGAAACCGATGAGGACTCGGAGTTTGATGTGTAG 498 0.4317 MAKGATRSRRRSRKRSLPSPSASSASDKRSTRHSNGRIVLRVKSNEAKKRSAQKTNSGKKPKAKQKKNNKKFDSKKPKKPPTAFFYFLEDFRREFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEFGETDEDSEFDV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0886 165 SUPERFAMILY HMG-box 70 150 IPR036910 -
Bisa04g0886 165 CDD HMG-box_AtHMGB1-like 82 138 - -
Bisa04g0886 165 MobiDBLite consensus disorder prediction 1 81 - -
Bisa04g0886 165 Pfam HMG (high mobility group) box 77 146 IPR009071 -
Bisa04g0886 165 MobiDBLite consensus disorder prediction 1 16 - -
Bisa04g0886 165 Gene3D High mobility group box domain 71 160 IPR036910 -
Bisa04g0886 165 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 77 146 IPR009071 -
Bisa04g0886 165 SMART hmgende2 76 147 IPR009071 -
Bisa04g0886 165 MobiDBLite consensus disorder prediction 54 74 - -
Bisa04g0886 165 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 43 162 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0886 Bisa-ChrBisa04 21195984 21201656 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa04g0886 HMG_box 3.7e-18 CL0114