Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0800 ATGTTGAACGTGGATGTGATCGGGAACAAGAAGAGGAAGAGATGTGGGAAGGCTTTCAGATTCAAGAACTTCGGAGAGCCTGGGTATCCTGTGGAGTTCACAGGGCCATTTCGTGAGAATGTGAATGCACTGCTCGAGTTTGCAAACTTGGAGAATAAATTAGGGTTTGAAATGCCCATATGGTCATTTCAACTTGAGGTTCATCGACACCCTCCATCTCATATATTTTTGCTTGTGATTGAAGAGGCAACGGAGGCGTCTATGAATCATCACTGCAAGCATTGTCAATACGTTGGGTGGGGGAACCACTTCATATGCAATAAGAAATATCACTTTCTTTTGCCATCAAAGGAGGCAATGGCTGCAAGTGTGAGCTGTGAAGTCCCATGTGAAGCCATTGCCGCCATGAACAACAATAATGGTAAGTCCAAGTTAATAGAACTACAGGGCCATATGATGCAAGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTGTCAATGGGCTCGAAACGGGTTCGGGTCTTGCTGGATACCGGATCATGGAGTTTTGGGATCGCTTATGCACCGGCTTGCAAGCAAGGAGAGTGAGTTTGAATGACATTTCACAGAAAGGAGGGATGGAACTAAGGCTTATCAATGGAATAGCACACAGCGAGGCTTGGTTTGGACGATGGGGCTACAAGTTTGGGAGAGGATGCTTTGGTGTGACTGAATCCACATACCAAAAGGCCATAGAGGCTATAAGAAGCATTCCACTTTACATCCTAATAGGGAACTCCTCTTACCATCATGACATCCCAATAATCTTCTCAAGGTACCAAACCCTCTCCCACCAATCCCTAGTCACGCTGGGCGACCTATTCCAGTTCATGTTAGAGCTCAAATCCCGTCTTCCCCCGGGGGGCGAAAGCTACACAGATTCCTCCTGCAACAGTGCTGGGAGTGGCATCATGGTTGAGGCCAATTGTCGTTGGTCCCCAAAAAGGATCGAGATGGCGACTAGGGTTATTGTGGAGGCCTTGAAGAGAGCTGAGTTCAAGTGGATCTCAAGGCAAGAGGTCAGGGATGCCGCCAGGGCCTACATCGGGGACACAGGCTTGCTCGATTTCGTGTTGAAATCTTTGGGAAACCACATTGTGGGGAACTACCTGGTTCGTCGCAGCTTGAACCCTGTCACGAAGGTCCTCGAGTATTGCTTGGAGGACATCTCCAATATTTTCCCCACCCATCATCCTCAACAAGCTGGTAACTTCATCATGATCAATAACCCTAGTCCTAGTCCTACTAATCCAAGTATAAAGGACAGGTACAGGATCACTAGAGCTCAAGTCATGAAGGACATGTTCTCTGTGTACAAGTACATCCTTAAAGACCCCAAACCAGCACAAGGATCGATTTTCTCAGCCATTCCGTTGGCAGCCAGGATAATTCTCGACACTAAGTATCTCGTCAAAGACTACTTCGGAGAGCTTCCTTTCCAGGTTGATCTAGTGTTGGAAGGAAGACTATGTCTCTATTGCACAATCACATTGAGAAATGTCTACAATAACAACGTTAACGACCCAAACAAGGCCTTAATAATGCCACCTTATGAGAGCATCACATTGAAAAGCAACGCCACCGTTAACGACTTGAAGCTAGAAGTCGAGAGGAAGTTCAGAGAGATCTATTGGGGATTGGGGAGTTTCTCTGTGGACTCAATAAAAAGCTTGGAAATCGCAAGTGGGAATGATCTGGTTTTTGGGATGGTCGAGGTGGGAACAAAGCTCGTGCTTGAAGGATGGATTAATAGTAATAATTTTGGAGAAATTTGTGAGGGAAATATTCATGAGGTAAATAATAATAATAATGGGACGAATACGATAATTAGTGTTGTGGATTGCAGTTGTGGGACTAAGGAAGATGATGGAGAGAGAATGGTGTGCTGTGACATTTGTGAAACATGGCAGCATACGAGGTGTGTTCGTATTCCCAATGACGAAGATGTTCCTTCTATTTTTCTCTGCAAAAGGTGTGAGCAAGAAATTGTAATGTTCCCTTCGTTGCCATAG 2058 0.4538 MLNVDVIGNKKRKRCGKAFRFKNFGEPGYPVEFTGPFRENVNALLEFANLENKLGFEMPIWSFQLEVHRHPPSHIFLLVIEEATEASMNHHCKHCQYVGWGNHFICNKKYHFLLPSKEAMAASVSCEVPCEAIAAMNNNNGKSKLIELQGHMMQGVFHSNGFGHLLCVNGLETGSGLAGYRIMEFWDRLCTGLQARRVSLNDISQKGGMELRLINGIAHSEAWFGRWGYKFGRGCFGVTESTYQKAIEAIRSIPLYILIGNSSYHHDIPIIFSRYQTLSHQSLVTLGDLFQFMLELKSRLPPGGESYTDSSCNSAGSGIMVEANCRWSPKRIEMATRVIVEALKRAEFKWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNIFPTHHPQQAGNFIMINNPSPSPTNPSIKDRYRITRAQVMKDMFSVYKYILKDPKPAQGSIFSAIPLAARIILDTKYLVKDYFGELPFQVDLVLEGRLCLYCTITLRNVYNNNVNDPNKALIMPPYESITLKSNATVNDLKLEVERKFREIYWGLGSFSVDSIKSLEIASGNDLVFGMVEVGTKLVLEGWINSNNFGEICEGNIHEVNNNNNGTNTIISVVDCSCGTKEDDGERMVCCDICETWQHTRCVRIPNDEDVPSIFLCKRCEQEIVMFPSLP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0800 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 679 IPR013083 -
Bisa04g0800 685 ProSiteProfiles Zinc finger PHD-type profile. 627 677 IPR019787 -
Bisa04g0800 685 Pfam PHD-finger 630 676 IPR019787 -
Bisa04g0800 685 CDD PHD_MMD1_like 629 674 - -
Bisa04g0800 685 ProSitePatterns Zinc finger PHD-type signature. 630 674 IPR019786 -
Bisa04g0800 685 SMART PHD_3 629 675 IPR001965 -
Bisa04g0800 685 SUPERFAMILY FYVE/PHD zinc finger 627 677 IPR011011 -
Bisa04g0800 685 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0800 Bisa-ChrBisa04 18575707 18579697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0800 10 685 PHD Transcription Factor Family AT5G22260 49.347 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa04g0800 PHD 9.9e-09 CL0390