Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0792 ATGGGTCGTTCTCGTGGGAATTATCATGCTGATGAAGACCCTCATCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGACATTTCAGAATCTGGAGCTGCAGGTCAAGGAACAAGTGAAGGAAAAAAGGCCTTGTACCATTGCAATTATTGTAACAAAGATATTTCAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTATGTATAGAGTGTTTCTCTGTTGGAGCTGAGATGACACCACATAAAAGCAATCACCCTTACAGGGTTATGGACAATCTATCTTTCCCTCTCATTTGCCCAGATTGGAATGCAGATGACGAAATTCTGCTTCTGGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGAAGTTGCTGAGCATGTGGGGACAAAGAATAAAGAAGCATGCATAGAACACTATAGGAACATTTACTTGAACTCCAAATCCTTTCCTTGTCCGGACATGTCTCATGTTGTGGGAAAAAACAGAAAGGAGCTAGTTGCCATGGCTAAAGGGCTGGGAGATGACAAGAAAGGGATTCATATGGGAGATACTGGTGTTAAAGAAGAATCTCCATTTTCGCCATCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGGTACCTCTTGCTGTTTGCAGTCCAACTTAAATTCAGATCCTCTACTTGAAAGGAGTTCTGGAGGAAACAAGCCAAGTTTTGCAGGAAATGAAGGTCCTTTAGTAGAGTTGAGTGGTTATAACCCAAAAAGACAGGAATTTGATCCTGAATATGATAACGATGCTGAACAATTACTTGCTGAAATGGAATTTAAGGAGACTGACACAGATGATGAACGGGAACTGAAATTACGTGTATTGCGTATCTATTCAAAAAGGCTTGATGAAAGAAAGCGGAGAAAGGATTTCATACTTGAAAGAAATTTATTATACCAAAATCCTTTTGAGAAGGATTTAACAGCTGAAGAGAGGACTATATGTCGGAAATATGATATATTCATGCGCTTTCATACAAAGGAAGAGCATGAGGAATTGCTAAGAACAGTTATATCTGAACACAGAACTCGTAAAAGAATTGAAGAGCTCAAGGAGGCTCGAGCTGCCGGTTGCCGCACATCAGCTGAAGCAGATAGATATCTTGAGCAGAAGAGAAGGGAAGCTGAAGAAAGTGCTCATAGGTCTAAAGAGAAAGCACCGGCTGGCCCAAACAATCATGGGGTTTCAAATGCATTCATGTCTTTAGACTCTGCTGACAAGAATTCGAGTGCAAGACCAGCAGGGTGTGCTGGTTCCAGCTCCATCAATGAAATGGATGCAACAGGATACTATGGGGCTGATTTACTTTCTGTACCTGAGAAACGCTTATGCAGTGAACTTAGGTTGCCTCCATCAATCTATTTGAAGATGCAGGAGGTTCTCTCTTTGCAAATTCTCAGTGGCAATGTCATTGCCAAATCCGATGCCCACCACTTGTTCAATATGGATACCAGCAAGATTGACAGTGTTTATGACGTGCTCGTGAAAAAGGGGGTTGCTCTACCCTGA 1560 0.4179 MGRSRGNYHADEDPHQRSRRKKNAASGDISESGAAGQGTSEGKKALYHCNYCNKDISGKIRIKCAMCPDFDLCIECFSVGAEMTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNIYLNSKSFPCPDMSHVVGKNRKELVAMAKGLGDDKKGIHMGDTGVKEESPFSPSRVKVEDSHKAGTSCCLQSNLNSDPLLERSSGGNKPSFAGNEGPLVELSGYNPKRQEFDPEYDNDAEQLLAEMEFKETDTDDERELKLRVLRIYSKRLDERKRRKDFILERNLLYQNPFEKDLTAEERTICRKYDIFMRFHTKEEHEELLRTVISEHRTRKRIEELKEARAAGCRTSAEADRYLEQKRREAEESAHRSKEKAPAGPNNHGVSNAFMSLDSADKNSSARPAGCAGSSSINEMDATGYYGADLLSVPEKRLCSELRLPPSIYLKMQEVLSLQILSGNVIAKSDAHHLFNMDTSKIDSVYDVLVKKGVALP 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0792 519 Gene3D - 38 95 IPR043145 -
Bisa04g0792 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 155 IPR017930 -
Bisa04g0792 519 ProSiteProfiles SWIRM domain profile. 433 519 IPR007526 GO:0005515
Bisa04g0792 519 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 514 - -
Bisa04g0792 519 SUPERFAMILY RING/U-box 47 109 - -
Bisa04g0792 519 FunFam Transcriptional adapter 40 95 - -
Bisa04g0792 519 PIRSF Txn_adaptor_ADA2 34 518 IPR016827 GO:0003713|GO:0006357|GO:0035065
Bisa04g0792 519 SMART zz_5 43 88 IPR000433 GO:0008270
Bisa04g0792 519 MobiDBLite consensus disorder prediction 227 260 - -
Bisa04g0792 519 FunFam Transcriptional adapter 2 100 152 - -
Bisa04g0792 519 Gene3D - 434 517 IPR036388 -
Bisa04g0792 519 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Bisa04g0792 519 MobiDBLite consensus disorder prediction 387 416 - -
Bisa04g0792 519 SUPERFAMILY Homeodomain-like 434 516 IPR009057 -
Bisa04g0792 519 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Bisa04g0792 519 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Bisa04g0792 519 FunFam Transcriptional adapter 2 434 517 - -
Bisa04g0792 519 Pfam Zinc finger, ZZ type 45 87 IPR000433 GO:0008270
Bisa04g0792 519 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Bisa04g0792 519 MobiDBLite consensus disorder prediction 1 26 - -
Bisa04g0792 519 SMART sant 103 152 IPR001005 -
Bisa04g0792 519 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Bisa04g0792 519 MobiDBLite consensus disorder prediction 387 404 - -
Bisa04g0792 519 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Bisa04g0792 519 CDD SANT 107 149 IPR001005 -
Bisa04g0792 519 Gene3D - 101 152 - -
Bisa04g0792 519 CDD ZZ_ADA2 47 95 IPR041983 -
Bisa04g0792 519 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0792 Bisa-ChrBisa04 18410335 18416407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0792 1 517 EF-hand Containing Proteins AT3G07740 45.088 2.04e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa04g0792 Myb_DNA-binding 2.6e-11 CL0123