Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0768 ATGATTGTTCCTCATCCGACGTCTAGAACATCCCAGTTTTTTGTCAGTTGTCCGAAAACAATGGGAATGGACCCTGGCAAACTTTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTCCAGAATTTTGGAGATGTGGTGGAAGCTGTGATAATGAAGGATCGGACCACGGGGCGTGCCCGTGGTTTTGGATTTATTGTTTTTGCTGATCCTTCTGTTGCTGAACGGGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCGTCCCTAGAGATGATCAGAACATTTTGAACAGAAGCAACAGCAGCATTCATGGATCACCCGGCTCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTTGCATCCACAGTTACTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAAGTTCTGTATAAAACCTTTCACGAACTGAACGGTAAAATGGTTGAGGTTAAGCGGGCTGTTCCAAAAGAATTATCTCCCGGGCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAGGTAGAGTTAGTGGCTTCCCTAATGGCTTCATTCAGGGATATAATCCAAGCTTCGTCGGAGGGCATGGACTTAGAGCAGATGGAAGATTTAGTCCTGTTTCTGTTGGTCGGAATGGATACCCTCCATTAAGTCCTAGTTATGGGACAGGATTCAATTTTGAGCCAGCATTTAGTCAAAATGGAAATTCAAACTTAGCTTCTACCCTTATGTTAGGACGGGCACTAAACCCATCATATAATGGAAATTCAAGCAGGTACCATAATCCCATGGGGTATACTGGTGCAGCCGGAGGCAACAGTCCAACCTTAAGTTCAAAAAATCAGAATTTGTGGGGGAATGAAAATCTTAACTATGCTACAAACCCTGCAAATTCCGATGTCTTTCTGGGGTACGGAAGTCAAAATTCAAGCATGGGTTCTTTCAGTTCTTTTGGTAATATTGGAACGCTTTGGAGTTCCTCCCCAAGTGCTGATCAAGCTAGAACTGTTGGCTCCAGCTATGGTAAGGGCAGTCATCATTATGGCGCTGGAGATATTAATCTCGGGCCAAAACCAGTAGGCTACGGAAAAGGTAGTGAAGCCATTGTTGAACCAGCATCATCATATGCTCTATTAAATGGCAGTTATGATGGGGTATATAGGGACATGTATGAAGCTGGGTCAGTTTTTGGTGACCACACTTGGAGATCATCACCTTCAGAGCTTGAAGATACCAGTGCTCTTGGTTACGACTTCAGAAATTCAGTTTCAGACTTAATGAGCAAAACCCCTGGTGGCCACGTTGAGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1500 0.4313 MIVPHPTSRTSQFFVSCPKTMGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNILNRSNSSIHGSPGSTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNYGLGRVSGFPNGFIQGYNPSFVGGHGLRADGRFSPVSVGRNGYPPLSPSYGTGFNFEPAFSQNGNSNLASTLMLGRALNPSYNGNSSRYHNPMGYTGAAGGNSPTLSSKNQNLWGNENLNYATNPANSDVFLGYGSQNSSMGSFSSFGNIGTLWSSSPSADQARTVGSSYGKGSHHYGAGDINLGPKPVGYGKGSEAIVEPASSYALLNGSYDGVYRDMYEAGSVFGDHTWRSSPSELEDTSALGYDFRNSVSDLMSKTPGGHVEAYAVANRQSNRGIAA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0768 499 CDD RRM1_hnRNPA_hnRNPD_like 28 98 - -
Bisa04g0768 499 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 210 - -
Bisa04g0768 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 102 IPR000504 GO:0003723
Bisa04g0768 499 SUPERFAMILY RNA-binding domain, RBD 123 224 IPR035979 GO:0003676
Bisa04g0768 499 Gene3D - 122 209 IPR012677 -
Bisa04g0768 499 SUPERFAMILY RNA-binding domain, RBD 21 121 IPR035979 GO:0003676
Bisa04g0768 499 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 23 495 - -
Bisa04g0768 499 Gene3D - 25 108 IPR012677 -
Bisa04g0768 499 SMART rrm1_1 27 98 IPR000504 GO:0003723
Bisa04g0768 499 SMART rrm1_1 127 199 IPR000504 GO:0003723
Bisa04g0768 499 CDD RRM2_Hrp1p 127 204 - -
Bisa04g0768 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Bisa04g0768 499 FunFam Heterogeneous nuclear ribonucleoprotein 1 25 107 - -
Bisa04g0768 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 94 IPR000504 GO:0003723
Bisa04g0768 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0768 Bisa-ChrBisa04 17637334 17640787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0768 28 205 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 2.19e-15 77.0