Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0742 ATGTCTACAATCGATAATCCCGCCGTCGATTGTGTACGCCCCCGCCACGGTGGTGCCGGCGGCAGCGATCAAGATTCTCTCTTTTCGAAGCGCAGGGTTGACGATGGGGATGAAGACGACTGTGACTCCGCCAAATTCTGCGACTTAGTCTGTGCCAGAATGGGGAAAGACGAACCCAAAGCCGTCAATAACTCTGCGCACTTCAACTCTCACGCCTTCAGTGCCAATGCGTCCGACGTCGATACTAGGTTTTCTGATTGTGCTTCTTGCTCGTCTAGCTCCGAATCGAATCGCTCATCCTCGATGTTGCAATTCTTCGTTCGAGGAGTTAGAACTATAGTAATGCAAGCTAGTCCGCAGGATACTGTTAAATCGCTTCACGAGCGTATTCAAGCGATTGTGGGTATTCCTGTGTCTGAGCAAAGACTCATATATTGGGGTAAGCAACTTCAGTGGGAGCAGACTCTGGCCGAGTGTGAAATTCAGAACGATGCTAGTCTTCAATTGGTTGGCCGTATGCGCAGCACGGGGCACCCCAGAGCTTGGCAGATTCTGAACGATATGGTTTCGCTTATTTATCGTCTCTGCAAAGGTTATACCGGAGAGGATGCTTCGTCAACCATCAAGGGATTATTGAATGGTTATCTCAGCATGATTCCAAAAAAGGAGGGCAATCATTCTGGCTCCAGCTATATTCAGATTTTCATGTCTTCCTCCGCTCCTGAGGTTCTCGTTATGCTCTATCTATCGCCCTATAGAGGTAATAAATACTGTGCTGATTGTTGTATTAGGCTTTTTTTGAGTTCCTGCGCTGCCTTGTCTAATTCATTGCATACTGAGTATGCACGAGTAGTGTTAGAATTCTGTACATTGCTCCGAAGAGTTGGCTGTGAAGACCCTTTGTATACCTCTTGTCGGAGTACTTTAGGGTCTCTATTGGAGACTGTTGTTCTTTCAAAAAGTTCTGAGCATGTTGATGAATTGATTGTTATGCAAGATATTTTCCTCTTTGCTCGTGAGCTTGCAAATTGCTTGTTGAGGGATTTGGATTTGTGCATGCAATCCCCCAGTAATAACATAGGACGGCCATCACTGACTGTTGTTCGTGATTTTAAAGCATTCTTACTTGTATTAAGGACTAAAATCAGGGAGCAACAAGCTTCCAATGGGCCGATTTCTTCTGTGACTGATAAAGAACGTCATAAGAACCTCTTACTTAGTGAGCAGATTAAAAACCTTGGCCTTATGTTTTTTGAATTGTTGAAGGAAATGGACCAGTGCCTACAAAGTATGGAAAAGTTCTTGGCTGCTAAGAAAAGTGTGGAAGAGGATCTTTATGTCGGATGGTATCATTATCTTAACATCTTGAAGGAACTGTATCACATTTCTAAGCTCTGTGATGGTGCTGAAGAAGAACTTTTGTCAGTTTTGAGGCGTCACAAAAACATGTTCTGTCTACTAATTATTCGATATGCTAAGAGAACTGACAATCACCAGTGGATTCTTGAGCACAAAAGTCTGACAGATTTTGGATCCAGGAGGCATCTGGTTTTGATGATGTTCCCCGAGGTAAAAGAAGACTATGAGGAAATGCATGAGATGCTCATCGACAGGTCTCAGTTGTTGGCAGAATCGTTTGAGTACATATCACGAGCAGAGCCTGAATCTCTGCATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTGCGGGAGTGGTTTATCTTGTCATCTACTTTAAGGCAACTTGTTAGTGATGCCTACTTTACCGACAGTATACTCATGACAAATATAGGAGGAATTGACAAAGAACAACACTAG 1839 0.4383 MSTIDNPAVDCVRPRHGGAGGSDQDSLFSKRRVDDGDEDDCDSAKFCDLVCARMGKDEPKAVNNSAHFNSHAFSANASDVDTRFSDCASCSSSSESNRSSSMLQFFVRGVRTIVMQASPQDTVKSLHERIQAIVGIPVSEQRLIYWGKQLQWEQTLAECEIQNDASLQLVGRMRSTGHPRAWQILNDMVSLIYRLCKGYTGEDASSTIKGLLNGYLSMIPKKEGNHSGSSYIQIFMSSSAPEVLVMLYLSPYRGNKYCADCCIRLFLSSCAALSNSLHTEYARVVLEFCTLLRRVGCEDPLYTSCRSTLGSLLETVVLSKSSEHVDELIVMQDIFLFARELANCLLRDLDLCMQSPSNNIGRPSLTVVRDFKAFLLVLRTKIREQQASNGPISSVTDKERHKNLLLSEQIKNLGLMFFELLKEMDQCLQSMEKFLAAKKSVEEDLYVGWYHYLNILKELYHISKLCDGAEEELLSVLRRHKNMFCLLIIRYAKRTDNHQWILEHKSLTDFGSRRHLVLMMFPEVKEDYEEMHEMLIDRSQLLAESFEYISRAEPESLHAGLFMEFKNEEATGPGVLREWFILSSTLRQLVSDAYFTDSILMTNIGGIDKEQH 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0742 612 PRINTS Ubiquitin signature 111 131 IPR019956 -
Bisa04g0742 612 PRINTS Ubiquitin signature 132 152 IPR019956 -
Bisa04g0742 612 PRINTS Ubiquitin signature 153 174 IPR019956 -
Bisa04g0742 612 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 103 582 - -
Bisa04g0742 612 Gene3D - 103 175 - -
Bisa04g0742 612 ProSiteProfiles Ubiquitin domain profile. 103 176 IPR000626 GO:0005515
Bisa04g0742 612 SMART ubq_7 103 172 IPR000626 GO:0005515
Bisa04g0742 612 SUPERFAMILY Ubiquitin-like 109 187 IPR029071 -
Bisa04g0742 612 SUPERFAMILY Hect, E3 ligase catalytic domain 528 583 IPR035983 GO:0004842
Bisa04g0742 612 MobiDBLite consensus disorder prediction 1 39 - -
Bisa04g0742 612 Pfam Ubiquitin family 110 174 IPR000626 GO:0005515
Bisa04g0742 612 Gene3D Hect, E3 ligase catalytic domains 489 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0742 Bisa-ChrBisa04 16882438 16884541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0742 103 174 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 4.64e-11 59.7