Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0686 ATGGAGGAGAGTTCAAATGGGGTGGCTTTTGTGGGAGAGAATAGTGGTAGTGGGCTATTCTGTCCTCCTTCAATGATGATGATGCCTTTAGTGACATCTCATCATCATCATCAGCAGCATCATCAACATAGTGGTGATCATCATCCATTAATAAATCCAAATCCTAATCCTAATACTAATCATACCAGTACCCTCTTTTTTCCTACCCCTTGCACTAACACTACTAGTACTACCTCCTCCTCCTCCTTCTCTATCATGCTTCAAAACACCAAAACCACCACCATCAACAACAACATCAACAGAGACAAAAACACTACTGGGTTAAGGTTTGGCTGTTGTTTCATGGATACACACCACAACAACCTCAACAACAATGATGGTGGCTCTTCTTCTTGTTCTTCTTCCGTGAAAGCCAAGATCATGGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAATTGTCAAAAGGTGGGAGCGCCGCCAGAAGTGGTGGCGAGACTAGATGAGGCGTGTGCTAAGGCGGCGACGGCTGCAATGGGTGTCGACGGCGGCGGGTCGGGGTGCATCGGAGAAGATCCGGCGCTGGATCAATTCATGGAGGCTTATTGTGAGATGCTGACTAAGTATGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCGTGTTCTTCCTTCAGAACATTGAGCGTCAGTTCAGAGCTCTCACCATTGATTCTCCAATCGACTTTGCTTGCAATGAGAGCACTCTGAGGAACGAATCATCCGAGGAAGATATTGATGTGCACAACGGCAACAACATGGTCGACCCGCAAGCCGAGGACCGTGAGTTGAAGGGTCAGCTTCTGAGAAAGTACAGTGGATACCTGGGGAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGGCAACAGCTACTTGATTGGTGGACCAGACACTACAAGTGGCCTTACCCTTCTGAGTCACAGAAGGTGGCACTTGCAGAATCAACAGGTCTGGACCAGAAGCAGATAAACAACTGGTTCATAAATCAAAGAAAACGTCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAATTTATCCTCACTATTATATGGAAAATGTTCTCGGCAATCCCTATTCCATGGACTTCTCTCACACTATGCTCTGA 1188 0.4722 MEESSNGVAFVGENSGSGLFCPPSMMMMPLVTSHHHHQQHHQHSGDHHPLINPNPNPNTNHTSTLFFPTPCTNTTSTTSSSSFSIMLQNTKTTTINNNINRDKNTTGLRFGCCFMDTHHNNLNNNDGGSSSCSSSVKAKIMAHPHYPRLLAAYVNCQKVGAPPEVVARLDEACAKAATAAMGVDGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAVFFLQNIERQFRALTIDSPIDFACNESTLRNESSEEDIDVHNGNNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWTRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPIYPHYYMENVLGNPYSMDFSHTML 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0686 395 ProSiteProfiles 'Homeobox' domain profile. 297 360 IPR001356 GO:0003677
Bisa04g0686 395 Pfam ELK domain 277 298 IPR005539 GO:0003677
Bisa04g0686 395 MobiDBLite consensus disorder prediction 49 67 - -
Bisa04g0686 395 ProSiteProfiles ELK domain profile. 277 297 IPR005539 GO:0003677
Bisa04g0686 395 SMART KNOX1_2 134 178 IPR005540 GO:0003677|GO:0005634
Bisa04g0686 395 Gene3D - 302 364 - -
Bisa04g0686 395 ProSitePatterns 'Homeobox' domain signature. 335 358 IPR017970 GO:0000981|GO:0006355
Bisa04g0686 395 Pfam KNOX1 domain 136 175 IPR005540 GO:0003677|GO:0005634
Bisa04g0686 395 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 366 - -
Bisa04g0686 395 SMART KNOX2_2 187 238 IPR005541 GO:0003677|GO:0005634
Bisa04g0686 395 SMART HOX_1 299 364 IPR001356 GO:0003677
Bisa04g0686 395 CDD homeodomain 309 361 IPR001356 GO:0003677
Bisa04g0686 395 Pfam KNOX2 domain 190 237 IPR005541 GO:0003677|GO:0005634
Bisa04g0686 395 SUPERFAMILY Homeodomain-like 299 375 IPR009057 -
Bisa04g0686 395 Pfam Homeobox KN domain 317 356 IPR008422 GO:0003677|GO:0006355
Bisa04g0686 395 FunFam Homeobox protein knotted-1-like 2 302 364 - -
Bisa04g0686 395 SMART ELK_2 277 298 IPR005539 GO:0003677
Bisa04g0686 395 MobiDBLite consensus disorder prediction 33 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0686 Bisa-ChrBisa04 15519223 15526116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0686 114 395 Homeobox Transcription Factor Family AT1G62360 73.379 2.28e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa04g0686 KNOX2 7.5e-21 No_clan