Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0599 ATGAAAGAAGTATGGTTAGGGTTGGGGTCTCGCTTTCCTCCACAGCATTCTTCCTCGTCCTTCTTCTTCTTCCTTCTTCTTCCTTCTTCTCAGTTCTCTCTCTTCTTTCTCTCTCTAGAATTTCACATTTCTTCTTTCAAGATGATGCAGCCTAGACCTGGCATGGCTCCACCGACCATGGGCCAACAGCCCAATCAACAGTACCCGCAGCAGCAACCCCCCTACATGATGATGCCGCCGCAGGCTCAGGGGCCACCGATGTGGGCACCGACAGCCCAGCCGCCGCAGCAGACAGTTGCTCCGCCGCAACCGACTCAAGTCGTCCAGCCCACGAGCGCAGATGAGGTCCGTACGCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAAAACTATTTGTACGGTCTTTTCGCTCATACTGGCGAGGTGGCCTCTGTGAAAGTTATTCGGAATAAGCAAACTAATCAGTCGGAAGGATATGGGTTTATTGAGTTTTTTACTCGTGCAGCTGCTGAGAGAATACTTCAAACATATAATGGCGCTATTATGCCAAATGGTGGGCAGAACTTCAGATTGAACTGGGCTACTTTTAGTGGGGGTGAGAGGCGTCATGATGATTCTCCAGACCACACAGTGTTCGTTGGAGACTTGGCCGCAGATGTAACAGATTACATGCTGCTGGAGACATTTAGGTCTCGATATTCCTCGGTTAAAGGTGCAAAAGTGGTGATCGACCGGCTCACTGGGAGGACCAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAAATGCGAGCTATGACTGAGATGCAAGGATTTCTGTGTTCATCCAGACCCATGCGGATTGGACCTGCCACAAACAAAAACCCTGGCGCCCAGTCAAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGGAATTTGGATCCCAATGCTACAGATGAACATTTGAGGCAAGTTTTTGGCCAATATGGGGAGTTAGTACATGTTAAGATTCCGGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCACTGAGGATGTTAAATGGAACTATGTTAGGTGGACAAAATGTTCGTCTCTCATGGGGTCGTAGTCCTTCGAACAAACAGACTGTGTCCGACCCCAACCAGTGGAATGGTGGTTATTACGGATATGGTGCTCAGGGATATGAGAATTATGGATATGCTCCTGCTGCTGCACCTCAGGATCCTAACTTGTATGGCAGCTATCCTGGGTATGCCAATTACCAACCACCACAGCAACAGCAGCAGATGGGATATAGTTAA 1353 0.4834 MKEVWLGLGSRFPPQHSSSSFFFFLLLPSSQFSLFFLSLEFHISSFKMMQPRPGMAPPTMGQQPNQQYPQQQPPYMMMPPQAQGPPMWAPTAQPPQQTVAPPQPTQVVQPTSADEVRTLWIGDLQYWMDENYLYGLFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQTYNGAIMPNGGQNFRLNWATFSGGERRHDDSPDHTVFVGDLAADVTDYMLLETFRSRYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQMRAMTEMQGFLCSSRPMRIGPATNKNPGAQSKASYQNPQGAQNENDPNNTTIFVGNLDPNATDEHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTMLGGQNVRLSWGRSPSNKQTVSDPNQWNGGYYGYGAQGYENYGYAPAAAPQDPNLYGSYPGYANYQPPQQQQQMGYS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0599 450 MobiDBLite consensus disorder prediction 53 111 - -
Bisa04g0599 450 Gene3D - 296 396 IPR012677 -
Bisa04g0599 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 197 IPR000504 GO:0003723
Bisa04g0599 450 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 109 391 - -
Bisa04g0599 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 289 IPR000504 GO:0003723
Bisa04g0599 450 MobiDBLite consensus disorder prediction 431 450 - -
Bisa04g0599 450 MobiDBLite consensus disorder prediction 281 314 - -
Bisa04g0599 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 387 IPR000504 GO:0003723
Bisa04g0599 450 SMART rrm1_1 118 193 IPR000504 GO:0003723
Bisa04g0599 450 SMART rrm1_1 211 285 IPR000504 GO:0003723
Bisa04g0599 450 SMART rrm1_1 316 383 IPR000504 GO:0003723
Bisa04g0599 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 184 IPR000504 GO:0003723
Bisa04g0599 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 281 IPR000504 GO:0003723
Bisa04g0599 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 380 IPR000504 GO:0003723
Bisa04g0599 450 FunFam Polyadenylate-binding protein RBP45 57 201 - -
Bisa04g0599 450 Gene3D - 55 200 IPR012677 -
Bisa04g0599 450 Gene3D - 201 295 IPR012677 -
Bisa04g0599 450 MobiDBLite consensus disorder prediction 73 101 - -
Bisa04g0599 450 MobiDBLite consensus disorder prediction 436 450 - -
Bisa04g0599 450 FunFam Polyadenylate-binding protein RBP45C 294 419 - -
Bisa04g0599 450 CDD RRM1_SECp43_like 118 198 - -
Bisa04g0599 450 CDD RRM2_SECp43_like 209 288 - -
Bisa04g0599 450 FunFam Polyadenylate-binding protein RBP45C 202 293 - -
Bisa04g0599 450 SUPERFAMILY RNA-binding domain, RBD 300 412 IPR035979 GO:0003676
Bisa04g0599 450 MobiDBLite consensus disorder prediction 289 314 - -
Bisa04g0599 450 SUPERFAMILY RNA-binding domain, RBD 116 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0599 Bisa-ChrBisa04 13617608 13625800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0599 89 392 Eukaryotic Initiation Factors Gene Family AT1G22760 28.387 1.94e-28 116