Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0518 ATGGCAATCAAAAAGTCTACTTCTGGTCGTCAAAAGATCACAATTGAGAAAATACTAAAGAAAAGTAACTTACAGGTTACGTTCTCCAAGCGTCGCTCAGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACGCTTTGTGGGGTAGAGATTGCGATTATAGTGTTTTCTCCGTCTCACAAACCCTTCTCTTTTGGACATCTAGGAGTTGACTCCATAATCGATCGCTATCTCGCTCGAAACCCTTCAAATCTGGACTCATCAATCAGTGTTTATCAAGATTCTAATCTTCGCAATCTCAATCTCAACGTGCAGCTGACCCAGCTTCTTGATCAATTAGAGAGTGAGAAGAAGCGAGGAGAAGAGCTTGATCAAGCGAGGAAAGCGAGGCAGAGGGAGTTCTGGTGGGAGAACCCTATTCATGAACTCGGTTTGGTTGAGTTACAGCATTTGATGTTTTCACTGAAGGAACTGCAAAACGATGTTTCAAAACATACTACCAAAATCTTGATGGATCAAACGAGTTTTTCTTCTTCTTCTTCTTCTTCTTCACCAAGTTTTGAGGCAAATCATGGATTTGGACCTTATGATTATGCCTTTGAGAACAAATCAGCTGGTGCTGGAATTAATGCTGTTTCTTCAAGTATTATTCCAATCTTTGGCCATAACCTCAGTTATCCAGCTCACATGGATAGCTTTAAGTTTATTTCTTGA 711 0.4093 MAIKKSTSGRQKITIEKILKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPSHKPFSFGHLGVDSIIDRYLARNPSNLDSSISVYQDSNLRNLNLNVQLTQLLDQLESEKKRGEELDQARKARQREFWWENPIHELGLVELQHLMFSLKELQNDVSKHTTKILMDQTSFSSSSSSSSPSFEANHGFGPYDYAFENKSAGAGINAVSSSIIPIFGHNLSYPAHMDSFKFIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0518 236 PANTHER MADS BOX PROTEIN 10 164 - -
Bisa04g0518 236 Coils Coil 98 125 - -
Bisa04g0518 236 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Bisa04g0518 236 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Bisa04g0518 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Bisa04g0518 236 Gene3D - 93 180 - -
Bisa04g0518 236 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bisa04g0518 236 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0518 Bisa-ChrBisa04 10336687 10337397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0518 9 161 Type I MADS-box Gene Family AT2G24840 53.205 3.04e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa04g0518 SRF-TF 1.6e-24 No_clan