Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0517 ATGTCGTCGTCGATCTCGAGGAAGAGCAAGGGTCGCCAGAAGGTGGAGATGAAGAAGATGAGCAATGAGAGCAACCTGCAAGTCACCTTCTCCAAGCGTCGCTCTGGGCTTTTCAAGAAAGCCAGCGAGCTTTGCACGCTCTGTGGCGCTGAGGTGGCTCTCATCGTCTTCTCGCCTGGCGAGAAGGTCTTCTCTTTTGGACACCCCAACGTCGATGCTGTGGTGGATCGCTACCTCACCGGAGCCCCGCCGCCGCAGACCTCCGCCACCATGCAGCTCATCGAGGCGCATCGCAGCGCTAACCTGCGCGAGCTCATCGGGCAGTTCACCCAAATATCTGCCCAACTCGATAGTGAGAAGAAGCGCTGTGATGAGCTGAATCGCATGAGAAAGGCTACCCAGACTCAATGTTGGTGGGCAGCCTCTATAGATGAGATGACAAAGGCACAACTCGGGCAGCTCAAGGGTGCCTTAGAGGAGTTGAAGAGGAGCGTAACTAGGCAAGCCGATAGGATGATCTTGATTCAAAGTGCTAGCAGTAACTCCACTCAATTTTTTGTTGGCAGTTCCTCCTCCAATGTAGTGGCGGCGCCTCCTATGCCGCCACCACCTCAGGTATTTCAGTCGCCATCGTTGATTCAAAATCCTGAGTTTGACGGAAGTATGATGCCACCATCACATTCACACCATGGGTTTGGCAACAACATGGGAGGGTACGGAGGACCAGGGTTTTACTAA 738 0.5393 MSSSISRKSKGRQKVEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPNVDAVVDRYLTGAPPPQTSATMQLIEAHRSANLRELIGQFTQISAQLDSEKKRCDELNRMRKATQTQCWWAASIDEMTKAQLGQLKGALEELKRSVTRQADRMILIQSASSNSTQFFVGSSSSNVVAAPPMPPPPQVFQSPSLIQNPEFDGSMMPPSHSHHGFGNNMGGYGGPGFY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0517 245 Gene3D - 22 90 IPR036879 GO:0003677|GO:0046983
Bisa04g0517 245 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Bisa04g0517 245 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Bisa04g0517 245 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Bisa04g0517 245 PANTHER MADS BOX PROTEIN 12 168 - -
Bisa04g0517 245 SUPERFAMILY SRF-like 11 95 IPR036879 GO:0003677|GO:0046983
Bisa04g0517 245 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
Bisa04g0517 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Bisa04g0517 245 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Bisa04g0517 245 Coils Coil 116 136 - -
Bisa04g0517 245 MobiDBLite consensus disorder prediction 1 23 - -
Bisa04g0517 245 CDD MADS_MEF2_like 11 81 IPR033896 GO:0000977|GO:0045944
Bisa04g0517 245 Gene3D - 91 185 - -
Bisa04g0517 245 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0517 Bisa-ChrBisa04 10305016 10306895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0517 7 238 Type I MADS-box Gene Family AT5G60440 48.333 2.07e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa04g0517 SRF-TF 1.1e-24 No_clan