Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa04g0487 | ATGGCCAGTTTCGCCGTAACCACACAAAAATGCACCGTCTGTGAAAAAGCCGCCTATCCCGTCGATAAACTCACCGCCGACGGCCGTGTCTACCACAAGGCTTGCTTCCGATGTCATCATTGCCGCAATACACTTAAGCTAAGCAACTTTTGCTCTTTTGAGGGGGTGCTCTACTGCAGACCCCACTATGATCAACTCTACAAGAGAACTGGTAGCTTGGATAAGAGCTTTGAAGGAACACCCAAGGTTCAGAAACCAGAAAGACAGACCGAGAATGAGAATGCCAAGGCTCTCTCAAACATGTTCTTGGGCACCAAAGACAAATGTGCAGCTTGCAAAAAGACAGTTTATCCTACCGAGAGGGTTTCAGTGAATGGGACTCCCTACCACAGGGGCTGCTTCAAGTGTTCCCATGGAGGTTGTACAATAAGCTCAGCAACCTTCATCTCACATGAGGGAAAGATATACTGCAAGCACCATCACATTCAACTCTTCAGAGAGAAAGGCAACTACAGCCAGCTTGATGGTGACAAAGAGAAGAACACTAACAACACTGTGGATGCCACAACTTTGAATGATGCGATTGGGGATTTGCAGAGGGAAAATAAGGAGGTTGAAGATAGGAAGGATCCCTGTGATTTCACTGTTAAAGAGAAGGCAAAAATCTTTCATGAGGGGAGTTGTGGATATGGCAGTTCTCCTGATGAAAAGGACAATGATGAAGAGCATGTTGGTCATGATCTGCTGAGAAATGCTTCATGTCCCATAATTATAGCAGCTTCTTCATCTTCTCAACCACATTCTTTTTCCTGTTCATCTTCTCCTTTTCGTTTCTCAAAAGCTAACGACGTTGACACTTCTGATTCTGATTCATGTGTGGAACAGCTTAGCGGTGATCCCAGCCATGGCAGTCTCAGTCCTGAGCAACACCATGACTCAGGGAAAAGTGGTGAAGTTGCAGAGACAAATGGTGAGAAGGAGAAGGAGGCACAGAATTTGCTCAACAAGCTGAATTTCCAGCTCTTGGATAAGAATGGAAGAGAGGTGAAAATCAACGTGACATATAGGACTAATGAGAAGAAGAAGAAGAGAGCTCAAAAGGACAAGGAAGTGCAGAAGTCGTCCGGCAAGGCTATTATGTCATGA | 1146 | 0.4529 | MASFAVTTQKCTVCEKAAYPVDKLTADGRVYHKACFRCHHCRNTLKLSNFCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPERQTENENAKALSNMFLGTKDKCAACKKTVYPTERVSVNGTPYHRGCFKCSHGGCTISSATFISHEGKIYCKHHHIQLFREKGNYSQLDGDKEKNTNNTVDATTLNDAIGDLQRENKEVEDRKDPCDFTVKEKAKIFHEGSCGYGSSPDEKDNDEEHVGHDLLRNASCPIIIAASSSSQPHSFSCSSSPFRFSKANDVDTSDSDSCVEQLSGDPSHGSLSPEQHHDSGKSGEVAETNGEKEKEAQNLLNKLNFQLLDKNGREVKINVTYRTNEKKKKRAQKDKEVQKSSGKAIMS | 381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa04g0487 | 381 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
| Bisa04g0487 | 381 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Bisa04g0487 | 381 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 36 | - | - | |
| Bisa04g0487 | 381 | MobiDBLite | consensus disorder prediction | 305 | 332 | - | - | |
| Bisa04g0487 | 381 | FunFam | LIM domain and actin-binding 1 | 103 | 173 | - | - | |
| Bisa04g0487 | 381 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Bisa04g0487 | 381 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
| Bisa04g0487 | 381 | MobiDBLite | consensus disorder prediction | 282 | 304 | - | - | |
| Bisa04g0487 | 381 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Bisa04g0487 | 381 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Bisa04g0487 | 381 | Pfam | LIM domain | 109 | 164 | IPR001781 | - | |
| Bisa04g0487 | 381 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Bisa04g0487 | 381 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
| Bisa04g0487 | 381 | Coils | Coil | 188 | 208 | - | - | |
| Bisa04g0487 | 381 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Bisa04g0487 | 381 | PANTHER | OS06G0237300 PROTEIN | 2 | 94 | - | - | |
| Bisa04g0487 | 381 | MobiDBLite | consensus disorder prediction | 353 | 381 | - | - | |
| Bisa04g0487 | 381 | MobiDBLite | consensus disorder prediction | 282 | 332 | - | - | |
| Bisa04g0487 | 381 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Bisa04g0487 | 381 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
| Bisa04g0487 | 381 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
| Bisa04g0487 | 381 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Bisa04g0487 | 381 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa04g0487 | Bisa-ChrBisa04 | 8882670 | 8885648 | Transposed |
Transcription factors information