Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa04g0471 | ATGTCTTTGCAAACTCTGAATTCTCCTGCTACAGCCTTCCCCTACAAGCAAGTCCACGAGGAAGAAGAAGAAGAAGACGACGAGATCGATCTTCACTGGGCCAAAGGGAAGCGCTCGAAACGACACCGTACCGACGAGGACGACACCTCGGACACGCCTTCCGAAGAAGAGTACCTCGCGCTCTGCCTCATCATGCTCGCTCACAGCGGCAACAAAAACGACAACGACAACAGCGCTGCCCCTGTACGACGTCGTTCGACAGACTCGGATTCGTCGTCGCCGATTGTTCATGCTTCTGAGAAGCTCTCTCATAAGTGTTCCGTCTGCAATAAGGCCTTTTCGTCTTATCAGGCTCTCGGTGGCCACAAGGCCAGCCACCGGAAGTCCACGGCGTCGGATTCCGCCGCAGCCGACAACGCCTCCGCCTCCGCAGCCTCCGGCGCCGGAAGGATGCACGAGTGCTCCATCTGTCACAAGGCTTTTCCGACCGGTCAGGCCCTGGGTGGTCACAAGAGGTGTCACTACGACGGCGGCAACGGGAACAAAACCAGCAGCAGCGGTGGTGCCGGTGCCAGCGCTGGTGTAATCTCGTCGGAGGGAGGCGTTGCTTCCACCGTGAGCCTCCGCGGATTTGACCTCAACCTGCCGGCCCCGTTGAGCGACTTCTCCCCGGTGGAACTCGGAGGCGGCGATGAGTTGACGGCGAAGAAGAATGTGAAAAGCGTGGAACAGGAGGTGGAGAGCCCGTTACCGGTAGTAGCCGGTAACAAGAGACCTCGGGCGTTTTTTAATGCGGAGCGTTCGACGACGTCGTTGCAGGATTGA | 825 | 0.5867 | MSLQTLNSPATAFPYKQVHEEEEEEDDEIDLHWAKGKRSKRHRTDEDDTSDTPSEEEYLALCLIMLAHSGNKNDNDNSAAPVRRRSTDSDSSSPIVHASEKLSHKCSVCNKAFSSYQALGGHKASHRKSTASDSAAADNASASAASGAGRMHECSICHKAFPTGQALGGHKRCHYDGGNGNKTSSSGGAGASAGVISSEGGVASTVSLRGFDLNLPAPLSDFSPVELGGGDELTAKKNVKSVEQEVESPLPVVAGNKRPRAFFNAERSTTSLQD | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa04g0471 | 274 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 154 | 174 | IPR013087 | - | |
| Bisa04g0471 | 274 | Gene3D | Classic Zinc Finger | 101 | 174 | - | - | |
| Bisa04g0471 | 274 | SMART | c2h2final6 | 104 | 126 | IPR013087 | - | |
| Bisa04g0471 | 274 | SMART | c2h2final6 | 152 | 174 | IPR013087 | - | |
| Bisa04g0471 | 274 | SUPERFAMILY | beta-beta-alpha zinc fingers | 104 | 174 | IPR036236 | - | |
| Bisa04g0471 | 274 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Bisa04g0471 | 274 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 152 | 174 | IPR013087 | - | |
| Bisa04g0471 | 274 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 104 | 131 | IPR013087 | - | |
| Bisa04g0471 | 274 | MobiDBLite | consensus disorder prediction | 70 | 96 | - | - | |
| Bisa04g0471 | 274 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
| Bisa04g0471 | 274 | Pfam | C2H2-type zinc finger | 104 | 128 | - | - | |
| Bisa04g0471 | 274 | Pfam | C2H2-type zinc finger | 152 | 176 | - | - | |
| Bisa04g0471 | 274 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 106 | 126 | IPR013087 | - | |
| Bisa04g0471 | 274 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 38 | 217 | IPR044653 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa04g0471 | Bisa-ChrBisa04 | 8651154 | 8651978 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa04g0471 | 1 | 263 | C2H2 Transcription Factor Family | AT1G27730 | 42.701 | 1.92e-50 | 164 |
Transcription factors information