Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0449 ATGGCAGCCAATGCTATCAACATAGATGCTTCGTCAGAGCAAATGAGTAGTGAAACCGGAAAGTTAACATGCCATAACAACAATATCTCAGGACAGCTGCATACACTTGATCCTGGAACTGCCCATTTTGAATTGTCAGAAAAAACTATTCAGATTGACTCTGAATTTTTGGACGACAGGCAAAGGGTTCTTAGTACTGGGGAAACCAGTTCCCTCATTGATGGAACATCACCTAAAGTTTCTGACAGTATGACTGGGAATTTTGTCATTCAACTGTCTGCACAACCTCAATGTGACTTAGACAAGCCTTGTCAGACTGAAGAAGTTTCATGCCTTCAACATAATGCCTTTCAACTGGCTGGTGCTATCAGCATGGATGCTTCCTCGGATCAATTAAGAATCGAAACCAGAAAGTCAACATGCCATTACCACAATACCTCAGAACAGCCGCAAACACTGGATCCCGGAACTGCACACTTTGAATTGTCAGAAAAAACTAATCAGATTGGCTCCGATTGTTTTGACAATGAACAAAGAGTCCTTGGCACTGGAGAAACCAGCTCTCTTCTTGATGAAAAATCACCTAGAGTTTCTGAAAGTGAAATTGGGAATTCTATCATTCAACTGCCTGCAGAACTTCAACGTGACTTAGGCAAGAGTTGTCAGATGGGAGAAGGTTCACGCCTTCAATATAATGCCTTTGAACTGGCCGGCACTATCGGCATGGATGCTTCGTCAGATCAACTTAGAATTGAAAGCAGAAAGTCAACATGCCATAACCACAATACCTCAGAACAGCTGCGTACAATTGATCCTGGAACTGCACATATCGAATTGTCAGAAAAAACTAATCAGATTGGCTCTGAATATTTGGACAATGAACAAAGGGCCCTAGGCAGTGGGGAAACCAGCTTTCTCATTCATGAAAAATCATCTAAAGTTTCTAACAGTTTGAAGGGGAATTCTGTCATTCAGCTGCCTGCACGACCTCAATGTGACTTAGACGAGAGTTGTCAGACTAGAGAAGGTTCATGCCTTCAATGTAACACCTTAGAACAGGTTTCTGGTTCTTTGTCTAGTGATAAATCAGAGAACAAACATCAGCTGGCCTCCCAAATTGTTCAGAACGAACCTGCAGAAAAAAGTGATGCAAATGTACAATTAGATCCACCTTTTGAAGACATTACCAAAGGTAATAGTCCTAATTGTTTGCAAAGAAACTCTAAGAAAGCAACTCATGTCCTGTTGGGGTGCAAGGATAAAAGAATTTCAAAATCATCGGAGAAAAAATATATGCTAAGAAGTGGTGACAGAATTCTGCAGTCAAGGATGAGCAAAAAACCTAAACCATCAGAACTGAATACTAATTTGGTTAATGTTGACAATGATGGTGAAAAGAGAAGAGGAAGCAAGAAGAAGAATATGGGAAGACGAGAAGGAGTGATTGATGAATTCTCAAAAATCAAAGCTCGTCTAAGATATGTATTGAAGCGAGTGAGCTATGAGCAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCCTGGAAAAATTGAAGCCAGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATACTTCGGCTTAAATTGAAAATTAGGGATCTGTTTCAACATTTGGATACATTGTGTGCTGAAGGCAGGCTTCCAGAGTCTTCGTTTGATTCCAAAGGAGAGATTTGCAGTGAAGATATATTCTGTGCAAAGTGCAGGTCCAAAGACTTGACCACTGGTAATGATATAATACTTTGTGATGGTGCTTGTGACCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTGTTGACTGAAAACATTCCACCTGATGATGAGGGTTGGCTATGCCCGGGTTGTGATTGCAAAGATCACTGCCTTGATCTTCTTAATGACTCCTTAGGAACACGTCTCTCAGTTACTGACAAGTGGGAGAGGGTTTTTCCAGAGGCAGCTGCTGGAAATAAAGTGGATCACAATTTGGGACTTTCATCGGATGATTCAGATGATGGTGATTATAATCCTGATGTTGCAGAAGATGAGGAGGTTGAAGGAGGCAAATCAAGTTCCGATGAATCTGAGAACTCTTCAGCTTCTGAGGAAATGGAGGTTTCTCATGGTGAGGATCCATACTTAGGCCTTCCCTCTGAAGATTCAGAAGACGATGACTTTGATCCTATTGCTGCAGATCACGACAAGGATGTGGCTGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCCAATGTAGTTAAGGTTAATACATTCTCTGGACAGGATTATGATCCTATATCTGCATCATCTTTACTAGAACTAGACCGTGGTCAAGAAGCTTCCACTCCTGTTTCTGGGAGAAGACATATTGAAAGATTGGACTACAAAAAACTGTATGATGAGACATACCAAAATGCTCAATCTGATGCTAGTGACGATGAAGATTGGACTGAAAGTGAAACTACTACTTCTAGTGGAAAATTTACCGGCAAAGGGGCTTCAGTGTCACCAAATCAAAAAGCCTCAATACTGGACCACATGCAGAAAGAAACTGCACATACTCCTAGGAGGAATACTCATCAGAATAAAGTTGAAAATTTGGATAATTCTCCCTCTAAATTACTTGAAGGCTCTAGGAACAGTGGTTCAAATGATAAAAAACCTGGATCTTCAACTTATAAAAGACTTGGGGAAGACGCAGTTAAGGTACTTTACAAAAACTTCAAAGAAAATCAGTATCCAGACCGAGCCACAAAAGAAAGCATGGCACAAGAACTTGGACTTACTTCCAAGCAGGTTAGCAAATGGTTTGAGAATGCTCGTTGGAGCTTCCGTAATTCATCGCGTATGGAAGCCATTGCAGGTAAAAAAGTGTCACCTCAGCCAGCTGCCTCCAGCAGAGTTGAAAATGTGGTAGCACTTGGCAATGAGGAGAGGGACGCTAAATTGGTATACCGGGAGGGTAGTGTACAGAAATCAAAAACCCCAAGCTCTAGAAAGAGGAAGCAAATGTCAGATTCTCAGGGATCTGATACAAATATAAAGATACGATAG 3081 0.4129 MAANAINIDASSEQMSSETGKLTCHNNNISGQLHTLDPGTAHFELSEKTIQIDSEFLDDRQRVLSTGETSSLIDGTSPKVSDSMTGNFVIQLSAQPQCDLDKPCQTEEVSCLQHNAFQLAGAISMDASSDQLRIETRKSTCHYHNTSEQPQTLDPGTAHFELSEKTNQIGSDCFDNEQRVLGTGETSSLLDEKSPRVSESEIGNSIIQLPAELQRDLGKSCQMGEGSRLQYNAFELAGTIGMDASSDQLRIESRKSTCHNHNTSEQLRTIDPGTAHIELSEKTNQIGSEYLDNEQRALGSGETSFLIHEKSSKVSNSLKGNSVIQLPARPQCDLDESCQTREGSCLQCNTLEQVSGSLSSDKSENKHQLASQIVQNEPAEKSDANVQLDPPFEDITKGNSPNCLQRNSKKATHVLLGCKDKRISKSSEKKYMLRSGDRILQSRMSKKPKPSELNTNLVNVDNDGEKRRGSKKKNMGRREGVIDEFSKIKARLRYVLKRVSYEQNLIDAYSGEGWKGYSLEKLKPEKELQRAKSEILRLKLKIRDLFQHLDTLCAEGRLPESSFDSKGEICSEDIFCAKCRSKDLTTGNDIILCDGACDRGFHQFCLEPPLLTENIPPDDEGWLCPGCDCKDHCLDLLNDSLGTRLSVTDKWERVFPEAAAGNKVDHNLGLSSDDSDDGDYNPDVAEDEEVEGGKSSSDESENSSASEEMEVSHGEDPYLGLPSEDSEDDDFDPIAADHDKDVAEESSSSDFTSDSEDLANVVKVNTFSGQDYDPISASSLLELDRGQEASTPVSGRRHIERLDYKKLYDETYQNAQSDASDDEDWTESETTTSSGKFTGKGASVSPNQKASILDHMQKETAHTPRRNTHQNKVENLDNSPSKLLEGSRNSGSNDKKPGSSTYKRLGEDAVKVLYKNFKENQYPDRATKESMAQELGLTSKQVSKWFENARWSFRNSSRMEAIAGKKVSPQPAASSRVENVVALGNEERDAKLVYREGSVQKSKTPSSRKRKQMSDSQGSDTNIKIR 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 357 382 - -
Bisa04g0449 1026 CDD homeodomain 904 957 IPR001356 GO:0003677
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 733 747 - -
Bisa04g0449 1026 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 362 1012 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 357 387 - -
Bisa04g0449 1026 Gene3D - 899 965 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 794 808 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 873 899 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 991 1026 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 461 477 - -
Bisa04g0449 1026 ProSitePatterns 'Homeobox' domain signature. 931 954 IPR017970 GO:0000981|GO:0006355
Bisa04g0449 1026 ProSiteProfiles 'Homeobox' domain profile. 896 956 IPR001356 GO:0003677
Bisa04g0449 1026 Pfam Homeodomain 906 951 IPR001356 GO:0003677
Bisa04g0449 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 636 IPR013083 -
Bisa04g0449 1026 Pfam PHD-finger 575 630 IPR019787 -
Bisa04g0449 1026 SUPERFAMILY FYVE/PHD zinc finger 563 633 IPR011011 -
Bisa04g0449 1026 ProSiteProfiles Zinc finger PHD-type profile. 573 630 IPR019787 -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 830 854 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 445 477 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 855 872 - -
Bisa04g0449 1026 FunFam pathogenesis-related homeodomain protein-like 567 627 - -
Bisa04g0449 1026 Coils Coil 528 548 - -
Bisa04g0449 1026 SMART HOX_1 898 960 IPR001356 GO:0003677
Bisa04g0449 1026 CDD PHD_PRHA_like 575 627 IPR045876 -
Bisa04g0449 1026 SUPERFAMILY Homeodomain-like 900 960 IPR009057 -
Bisa04g0449 1026 SMART PHD_3 575 628 IPR001965 -
Bisa04g0449 1026 ProSitePatterns Zinc finger PHD-type signature. 576 627 IPR019786 -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 780 905 - -
Bisa04g0449 1026 MobiDBLite consensus disorder prediction 664 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0449 Bisa-ChrBisa04 8378169 8383785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0449 421 953 Homeobox Transcription Factor Family AT3G19510 47.203 4.57e-133 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Bisa04g0449 PHD 1.2e-10 CL0390