LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa04g0422	ATGAATCGAGATTCGGCAAAAATGGAGGCGAAGAGGACAGACGTGGATCGGGTCAAGGGTCCATGGAGCCCTGAGGAGGACGAGCTGTTGCAGAAGCTAGTGCAACGGTACGGCCCTAGGAATTGGTCTGTCATTAGCAAATCCATCCCCGGGCGGTCCGGGAAGTCGTGTCGCCTCCGGTGGTGCAACCAGCTCTCGCCGGATGTGGAGCACCGGACCTTCACGCCGGAGGAGGATGAGATCATCATCAAGGCCCACGCCAAGTACGGCAACAAGTGGGCCACCATAGCCAGGCTTCTAAACGGCCGTACGGACAATGCGATCAAGAACCATTGGAACTCGACCTTAAAGCGAAAGTACTCGTCGATGATCGCCGACGAAGGCGCCACCGTGGATAAGCAGCCGCCAAAGAAATCGGTGGTCGGAGATCGCACCGTGCCGATACAGTCATTCTCGTCAAGCGGCCATTGTTACAGCCCGAGCAGTCCATCTGGATCTGATGTGAGCGATTCAAGTCTCCCTGTAGTTTCATCTGCAATGGTGATTCGCCCGGTAGCGAGAACTGCCGCAATCTTGCAGCCTTCCCAGCAAGCCGAGTCGCAACCGAGTCCAATCCTCAAGCTCAACAAGGAGCCGTGCACTGATCTCACTCTGTCCCTCTTGGGAGCCGAGTCAAACGAGTCAGAGAGGCTTGGAAATTCAAGATCTAGTGCAGAGGCACCGACGCCATCTGAGAAGCTGTCATCAATGATGACATTCGGGCCTGATTTACTGACGGTGATGAAGGAAATGATAAGGGACGAGGTAAGAAATTACATGGCGGGGCTCGATGATCGACTGTACTCGAAAACGACGGTGTGA	861	0.5494	MNRDSAKMEAKRTDVDRVKGPWSPEEDELLQKLVQRYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPDVEHRTFTPEEDEIIIKAHAKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSSMIADEGATVDKQPPKKSVVGDRTVPIQSFSSSGHCYSPSSPSGSDVSDSSLPVVSSAMVIRPVARTAAILQPSQQAESQPSPILKLNKEPCTDLTLSLLGAESNESERLGNSRSSAEAPTPSEKLSSMMTFGPDLLTVMKEMIRDEVRNYMAGLDDRLYSKTTV	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa04g0422	286	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	14	65	IPR017930	-
	Bisa04g0422	286	CDD	SANT	73	116	IPR001005	-
	Bisa04g0422	286	MobiDBLite	consensus disorder prediction	1	22	-	-
	Bisa04g0422	286	MobiDBLite	consensus disorder prediction	224	249	-	-
	Bisa04g0422	286	FunFam	MYB transcription factor	19	70	-	-
	Bisa04g0422	286	Gene3D	-	72	140	-	-
	Bisa04g0422	286	Gene3D	-	18	70	-	-
	Bisa04g0422	286	Pfam	Myb-like DNA-binding domain	19	65	IPR001005	-
	Bisa04g0422	286	Pfam	Myb-like DNA-binding domain	73	115	IPR001005	-
	Bisa04g0422	286	ProSiteProfiles	Myb-like domain profile.	14	65	IPR001005	-
	Bisa04g0422	286	SUPERFAMILY	Homeodomain-like	16	112	IPR009057	-
	Bisa04g0422	286	MobiDBLite	consensus disorder prediction	224	250	-	-
	Bisa04g0422	286	PANTHER	MYB PROTEIN-RELATED	19	202	-	-
	Bisa04g0422	286	SMART	sant	18	67	IPR001005	-
	Bisa04g0422	286	SMART	sant	70	118	IPR001005	-
	Bisa04g0422	286	CDD	SANT	21	63	IPR001005	-
	Bisa04g0422	286	ProSiteProfiles	Myb-like domain profile.	66	116	IPR001005	-
	Bisa04g0422	286	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	120	IPR017930	-
	Bisa04g0422	286	FunFam	Transcription factor MYB44	73	119	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa04g0422	Bisa-ChrBisa04	7839964	7840824	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa04g0422	12	276	MYB Transcription Factor Family	AT4G37260	48.592	1.08e-80	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa04g0422		Myb_DNA-binding	1.8e-17	CL0123