Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0349 ATGCATTCAATCATGGATGTATCTAAAAAAGCCAATGAGAAACGGAAACCTTCTTCACCCTCTCCTCCTAAGGTCGAGAAAGGTAGGCAGCTAAAGAAGGCTAAGACACGTGAATCCGACCAAGTTGATACTGAAACACAAGCTACAAGAAATAAACCAGCAAAACAGTTAAGACCCAAAAGAGCCACTGTTGATTCTCAATCTTCAGCTTTTGAAAGAGCAAAAGAGGTTCAAGCAAACTTATCCCTTCAATTTCCTAGCCTTATCAAGTCAATGCTCCCGTCACATGTAACCGGAGGATTTTGGCTGGGTCTTCCCAAAAAATTCTGTGAGATGCATTTGCCAAAGGCTGATTCTCCGATTGTTTTGGAAGACGAAAGTGGAAAAGAATACGAAACGAAGTATCTTACTGATAAGGTTGGCTTAAGTGCTGGATGGAGAGGATTTTCCATAGCTCACAATTTGCTTGAGGGGGATGTTTTAGTTCTCCAGTTAGTCCAACCTTTAAAATTTAAGGATTCTCTTTTTGACAAAGCAAGGCACATGATGTGGTGGAGAGAGACTAGAATCAAGAATATGAATCTTGCGGAATTTCGTGAAGTTGTTGTTTTGGCCGCCATTATTGGAGCAGCCATGTTTCCATGGAACATTGCGAAGTCGGCGGAGGCGATGTTCTCCCGCTGGGCGGCGAAGAGGGTATGCAAGTTCCTGCTGAAGAAGAAATTGGGGCAGTTTATTATGGGGGATATCGACCTCGACCAGCTGGATGTGCAACTCAGTCAAGGCACGATTCAGCTCAGCGATCTTGCACTCAATGTGGATTTCATTAATAAAAAGTTTGGCAAGGCAGCATCTTTAATGGTCAAAGAAGGATCAATTGGCTACCTATTGGTTAGAATGCCTTGGAGCGGCAAAGGTTGTGAGGTTGAAGTGAATGGGCTTGAACTGGTAATTTCTCCCTGCAGGGATAAAATTCCAACAAGTGAAGATGAAACTTGTGTTTTTGATGATAATGATAATAACCATCTCAAATATAGCTCACCTAGGACTGAGCAAGACAAAGGGGATGATGCACTAAAGTCGTCTTTGATGGATGTTCACGAAGGTGTTAAAACTATTGCCAAGATGGTAAAGGGGCTACTTACAAGCTTCCATGTGAAAATAGAAAATGTAATTGTTGCATATGATCCGTCTTTAGACCAGAGTGAGAAGAAAACAGAATATCATAGTACCCTAGTTCTTCGAATTTCTGAAATAGAGTGTGGAACATGCTTGTCCGAAGGTGCTGATTCAAGTTCTGATGTTCTGGGAATAAGCCGGTTAACAAACTTTGTGAGGTTTCATGGAGCTATATTTGAGCGTCTCAAAATAGATGAGGATGATTGTGCATCCTCTCTACATGCATTAGGAGAAGGATGTGGTGAACCTTCTTTAGGATCAAATAAAGCTACATGTCCAGTCATGACTGGGAAGAAAGATGGATTTGGTGGAGATGTAAAGTTAAGTATTCCTTGGAAGAATGGGTCTTTAGACATTTGCAAAGTGGAAGCAGATGTTTCTGTTGATCCTATAGTGTTAAGATTTCAACCTAGCACTATTAAATGGCTCTTGTATGCATGGGAAAATTATAAGAATCTGGAAAGGGATGGAGAAGTTTGTACAAGTCAAAACACAAGAGGATCTGCCCAATTAAAATCTTCATCGTTGTGCCATACATCAAATTCAATCTCTGTTACCAGTGGAACCAAAGAGGTTATAATTGATCATGGTAGTTTGCCAGATGATTTCTCTAACTTGACCTGGCCAGGATCACATACTGAAGCTTTGGTTCCTGCTTCACATCTTATTTCAAATTGGGTACCATTTTCTGGTGATATAAATCATAAAGATGGTAATAAAGAACTTGATTTTGGGGCTAGTGTGGACCAGTTTTTTGAATGTCTTGATGGAATGAGGAGTTTCCAATCAGCTTTAGGGAGCAGTGGAATGTGGAACTGGACATGTTCTGTTTTTACTGCTATTACTGCTGCATCCAGTCTTGCTTCTGGGTCTCTGCCTACTACTTCTGAACAACAACATGTGGAAGCCAATCTCAGAGCAACTTTTGCTGGAATATCTGTTGTGTTGTCTTTCAGTGATGAAGAACAGCAGCAATGTAATGAGCCAAAAACTGACGGGGTTGGATTGCACATTGATTATCTTGTTGCAGACTGCAATGAAATTCTTCTTGCTTTGCAGGTACGCCATCAAGTTACAACGGTTGAGGGAATGGTGAAGCATATGGAAATTGCTTATTTTTTGAACACTGGAATTGATGCTATAGATTCTGGTTTGCGAGGATATGATGATGCTAAAAATCAAAGTGCTCTGGTTCAACATCTGCAAGCTGAAGTCCTTGGTGCTCTTCCCTCATCTGTCACTTATGATCCAGGTTCTGATTCAGATTCATTATTTGGGTTAGTTGCAACAGACTTTCCATCAGGTTTTAATGATGGCTTATTGAAAGTGACAGTGTTTAGAACTTCTGGTGTCACTGATTGCAAATTCACTTTGCTATCAAGTTCTTCAGATAAAAGTCTAACAGGGCCAGTATCATTTTCACTGAACCTGCCACCATTTACTCTCTGGGTGATCTTTTCTGTCTTGAACGTGTTCTTTAACCTGCTAAAGGATGTTGGAAAATCAATTGAAGTGCTTAATGAAGCAAAGGAGAATATATCTAAAGCCTCAGATAAGAAGTGTGGATCATCTCTCAGTGATGTGGAGGGAGGTTCTGGTTCCTGTTTGACATCCCTCTCCACAACAGAATGTTTGCGTGGTGATATATCAATTTCTAGTGCAAGAGTGATACTGTGTTTTCCTTTTGAAAGAGGTGGAGATCATGCAAATTTCTTTTCCTGGGAGCAGTTTATTGCTCTTGATTTTACTCCACCGTCACCTTTGAAGAATGTTTGTCCTCCAGAGGGTATTCCAAATTCAAATGCAAGTTCAAAAAAAAAATTTCCTTCAGTAGCTGCAAAATCTTTACAGTTGAATGTTAATGATATACACATTTACTTGATTACGTCAACAAGTATTGATCATTGTAGAATCAGCTCCTGCCATGTGCAGAATGAGAAATATTCTGCCAGTTGCCTTCTGTCTGTTGCTAGCAGTACCAGTTGTTACTCTTTTGTTAATGTGGTTTGGCAGGAGGGCCAAGTGACTGGTCCTTGGATAGCAAAGAAAGCCTGGTCGTTAGCAAATTCTGATCAGTTCAAGGGCAGAGATGATTTTGTAGGAAGGGGCCATGAGTTTGTAGCTGCATCAACAGCGAAAAACCTGGAGGATTTTAAATCCCAAACTCAACAAGAGATGATTCTAAGCTCATCAAATTTCGTTCATGTTCATCTATCTCAAGTTGTGGTCAGCCTGAGTGATTCTCAATATAAAGATATACATTGCCTTTTATTTCAGATGCTGAATGAATTGGAATGTGTGACTTCTCAGGCAACCTTTGTTGAGAAAGAGTCTTTTGTCTCACAATCATCGATATATGTGGAATGTGGTTCTTTAGAAATTCTGACTAGCAGGGATATATCTGAGAGTATTAGGAGCTCATTGCAAAGTGAACTTCCTGGATTGTGGCATCAATTAAGATTGAAAGTTCAAAATTTTGAGTTGCTGTCTGTTACAAATACTGGTGGTATTAGGGGTGCTGAATTTTTCCGATTAACCCATGGTGAAGGCAAGTTGTGGGGTTTCATCAGTGGGGTTCCTGATCATGAGTTTCTTCTGGTTACTTGTAATAACTCCACAGTAAAACGAGGTGATGGAGGAGGTTCTAATGCATTGTCCTCTAGACGAGCTGGTTCTGATATCATACATCTTTCTGTCCCGGATAATTCCCATATTATGACATCTATAACTGTCAGTTGTGGTACAATTGTTGCTGTGGGTGGTCGCATGGATTGGTTCAATGCAATAATATCCTTTTTCAATTTGCCCTCTTCTGACACTGAAAAAGCTGTTGATAATACTGTGCCAAACAGGGAAGTGAATAGACCTTGCAAGACTTCTTTTGCTCTCAACTTAATTGACATTGCATTGAGTTATGAGCCCTATATAACAAATCGGGTGGTTCAAAATGACGTCAAAGATTCATATTCTGGCTTTTCTTGTGCCAATGAAGATATGGGTGAACAATGGGTTGCTTGTCTATTAGCTGCATCCTCATTGAGGCTTTCAACTGAAGCTTTGGGAGATTCAGTTGAGAGTTTTTACCTAATTAGAGTGCAAGATCTGGGGCTTCTACTTCATATAGTGTCAGGGATGAATAGTCTCTGTGGAACTTATAGTGTAGAGCATCTTCAAAAGGCTGGTTATGTTAAAGTTGCTCAGGAGGCTCTTATGGAGGCCAAATTTAAAACCAACTGTTCTAGTGGTAATCTTTGGGAAGTGGAATTGTCTGATTCTCACATTAATGTAGAAACTTGCCATGATACAACTGCCAGTCTGATTCATCTGGCTGCTCAACTTCAAAGATTATTTGCTCCTGATGTGGAAGAATCAATTGTGCATTTGCAGAATAGGTGGGATAATTTTCAACAGGCACAGCAGAGGAATGATCTTAATTATGAAACTGGGAACCTTAGCTGTGAAACCATAGTAACAACTTCTCAACAATGCCCTTCAAAACCATTTTTGGTGGATGGATCTAGAATGGCTGGCTTAATGGATGAGATATGTGATGATGCATTTCAAGTGAATGATAATAATACGTGGCAGCCTTCTTCTGGAGAAGGAATTAGCATGACACTTGATGATATCCTTGTTGATGATGTTAATAAGATGTTTATGGATGAGCCAGAAATTGTTTCTCACAAAGGACCTTTGACCGAGTCAGTGCCTGTAGTAGGACCTGAAGGTAGTCACACTTTGTTTCTGCAGGAGGGTTGCTTTCCAGAGATTATAGAAGAATATTGTTTTTCTAACTTCTGTCCTCTGTCTGAGACATCCGTTGGTTTACATTCTGATGAGCTTTGCAGATACAAACTGAGCAATCAGGAATGTAGAGGGATTGAAAGAGGAAGTGGTGGATGGTATCATGGCAACTCTCTAAAAGTTTTAGAAAACCACATTTCAGAGGAAAGTGAACAAACCAGACTGAAAATGTCTGCAGATAGCATGCTTCCGTCTAATGATAGTTCATTACACAGTGAGACCAGTGGACGTGTACTACTTGATAAAATTGATTTAAGGTGGAGAATGTATGGTGGTTCTGACTGGCCTAAGGAAAATGAACAGCATTCTGGGAGAGATACAACTGTTTGCCTGGAGCTTAAATTATCTGGGATGAAATTTCAGTATGATGTATTCCCAGTTGGTGGAGTAAGGTTATCCAAGATGTCTATGTCTGTTCGAGATATTAATCTGTATGACAGAAGCAGAGATGCACCCTGGATACTGGTGCTAGGATATTATCATTCGAAAGGCCATCCTAAGGAATCTTCCGCAAGAGCATTTAGGTTGGACTTGGAGGCAGTCAGACCAGATCCTCTAACTCCTCTTGAGGAGTATAGGTTGGATCTTGCTTTTCTTCCTATAAAATTACATCTACATCAATCCCAGCTTGATTTTCTTGTCAGTTATTTTGGGAGTAAGAGCACGTTGAGTGATCAATCTCCTATTCATTATCAAGATGTGGAGGGTTCAAAATTTTTGCCAGACAAAAGCAAAAATCTGGTACAGTCAATTGCATGCGAGGCTTTGCTTCCTTACTTTCAGAAACTTGATATTTGTCCTATCCTCGTTCGGGTGGACTACAGCCCCTGTCATGTAGATCTAGCAGCATTAAGATGTGGGAAGTATGTAGAGCTTGTAAATCTTGTTCGTTGGAAGGGGGTTGAGATCAACCTGAAGCATGTTCATGCAGCTGGCATCTATGGTTGGGGCAGTGTGTGTGAAACGATTATCACGGAGTGGTTGGAAGATATATCTCATAATCAGATCCATAAAATACTTCGGGGCCTTCCGACTGTAAGATCATTAATTGCAGTTGGTGCTGGTGCTGCTAAGCTAGTTTCATCACCAGTGAAGAACTACAAGAAGGAGCGGAGAGTGCTCAAGGGTATCCAGAGAGGTACAATTGCATTTCTTAGAAGCATTTCTCTTGAAGCTGTTGCACTTGGAGTGCATTTAGCTGCTGGAGCCCATGACATTCTGCTCCAAGCCGAATATATCCTTGCAAGCGTACCTACTTCTGTAACGGTGCCTGTAATGGATAAACCAAAGACAGATGTGCGATCGGATCAACCTCAAGATGCCCAACAGGGAATTAAACAGGCTTATGAGAGCCTCGGCAATGGCCTGGGAAAATCTGCTGCTGTATTAGTTCAGAACCCTTTGAAAAAATACCAGCGTGGCTCAGGTGCAGGACCTGCCCTGGCAGCTGCTGTGCGAGCAGTTCCTGCAGCTGCCATAGCTCCTGCTTCTGCATGTGCAAGTGCTGTACATTATACTCTACTTGGCATCAGAAATAGTCTTGATCCTGTCCGTAAAAAAGAGTCAATGGAGAAATATTGTCCAACACAACCCTGGGAAGAAGACTGA 6591 0.4095 MHSIMDVSKKANEKRKPSSPSPPKVEKGRQLKKAKTRESDQVDTETQATRNKPAKQLRPKRATVDSQSSAFERAKEVQANLSLQFPSLIKSMLPSHVTGGFWLGLPKKFCEMHLPKADSPIVLEDESGKEYETKYLTDKVGLSAGWRGFSIAHNLLEGDVLVLQLVQPLKFKDSLFDKARHMMWWRETRIKNMNLAEFREVVVLAAIIGAAMFPWNIAKSAEAMFSRWAAKRVCKFLLKKKLGQFIMGDIDLDQLDVQLSQGTIQLSDLALNVDFINKKFGKAASLMVKEGSIGYLLVRMPWSGKGCEVEVNGLELVISPCRDKIPTSEDETCVFDDNDNNHLKYSSPRTEQDKGDDALKSSLMDVHEGVKTIAKMVKGLLTSFHVKIENVIVAYDPSLDQSEKKTEYHSTLVLRISEIECGTCLSEGADSSSDVLGISRLTNFVRFHGAIFERLKIDEDDCASSLHALGEGCGEPSLGSNKATCPVMTGKKDGFGGDVKLSIPWKNGSLDICKVEADVSVDPIVLRFQPSTIKWLLYAWENYKNLERDGEVCTSQNTRGSAQLKSSSLCHTSNSISVTSGTKEVIIDHGSLPDDFSNLTWPGSHTEALVPASHLISNWVPFSGDINHKDGNKELDFGASVDQFFECLDGMRSFQSALGSSGMWNWTCSVFTAITAASSLASGSLPTTSEQQHVEANLRATFAGISVVLSFSDEEQQQCNEPKTDGVGLHIDYLVADCNEILLALQVRHQVTTVEGMVKHMEIAYFLNTGIDAIDSGLRGYDDAKNQSALVQHLQAEVLGALPSSVTYDPGSDSDSLFGLVATDFPSGFNDGLLKVTVFRTSGVTDCKFTLLSSSSDKSLTGPVSFSLNLPPFTLWVIFSVLNVFFNLLKDVGKSIEVLNEAKENISKASDKKCGSSLSDVEGGSGSCLTSLSTTECLRGDISISSARVILCFPFERGGDHANFFSWEQFIALDFTPPSPLKNVCPPEGIPNSNASSKKKFPSVAAKSLQLNVNDIHIYLITSTSIDHCRISSCHVQNEKYSASCLLSVASSTSCYSFVNVVWQEGQVTGPWIAKKAWSLANSDQFKGRDDFVGRGHEFVAASTAKNLEDFKSQTQQEMILSSSNFVHVHLSQVVVSLSDSQYKDIHCLLFQMLNELECVTSQATFVEKESFVSQSSIYVECGSLEILTSRDISESIRSSLQSELPGLWHQLRLKVQNFELLSVTNTGGIRGAEFFRLTHGEGKLWGFISGVPDHEFLLVTCNNSTVKRGDGGGSNALSSRRAGSDIIHLSVPDNSHIMTSITVSCGTIVAVGGRMDWFNAIISFFNLPSSDTEKAVDNTVPNREVNRPCKTSFALNLIDIALSYEPYITNRVVQNDVKDSYSGFSCANEDMGEQWVACLLAASSLRLSTEALGDSVESFYLIRVQDLGLLLHIVSGMNSLCGTYSVEHLQKAGYVKVAQEALMEAKFKTNCSSGNLWEVELSDSHINVETCHDTTASLIHLAAQLQRLFAPDVEESIVHLQNRWDNFQQAQQRNDLNYETGNLSCETIVTTSQQCPSKPFLVDGSRMAGLMDEICDDAFQVNDNNTWQPSSGEGISMTLDDILVDDVNKMFMDEPEIVSHKGPLTESVPVVGPEGSHTLFLQEGCFPEIIEEYCFSNFCPLSETSVGLHSDELCRYKLSNQECRGIERGSGGWYHGNSLKVLENHISEESEQTRLKMSADSMLPSNDSSLHSETSGRVLLDKIDLRWRMYGGSDWPKENEQHSGRDTTVCLELKLSGMKFQYDVFPVGGVRLSKMSMSVRDINLYDRSRDAPWILVLGYYHSKGHPKESSARAFRLDLEAVRPDPLTPLEEYRLDLAFLPIKLHLHQSQLDFLVSYFGSKSTLSDQSPIHYQDVEGSKFLPDKSKNLVQSIACEALLPYFQKLDICPILVRVDYSPCHVDLAALRCGKYVELVNLVRWKGVEINLKHVHAAGIYGWGSVCETIITEWLEDISHNQIHKILRGLPTVRSLIAVGAGAAKLVSSPVKNYKKERRVLKGIQRGTIAFLRSISLEAVALGVHLAAGAHDILLQAEYILASVPTSVTVPVMDKPKTDVRSDQPQDAQQGIKQAYESLGNGLGKSAAVLVQNPLKKYQRGSGAGPALAAAVRAVPAAAIAPASACASAVHYTLLGIRNSLDPVRKKESMEKYCPTQPWEED 2196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0349 2196 MobiDBLite consensus disorder prediction 1 69 - -
Bisa04g0349 2196 Pfam Autophagy-related protein 2 CAD motif 1446 1513 IPR026885 -
Bisa04g0349 2196 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 224 2187 IPR026849 GO:0006914
Bisa04g0349 2196 SMART B3_2 88 179 IPR003340 GO:0003677
Bisa04g0349 2196 ProSiteProfiles B3 DNA-binding domain profile. 88 179 IPR003340 GO:0003677
Bisa04g0349 2196 MobiDBLite consensus disorder prediction 6 45 - -
Bisa04g0349 2196 Pfam N-terminal region of Chorein or VPS13 231 330 IPR026854 -
Bisa04g0349 2196 CDD B3_DNA 86 177 IPR003340 GO:0003677
Bisa04g0349 2196 Gene3D - 63 178 IPR015300 -
Bisa04g0349 2196 Pfam B3 DNA binding domain 89 168 IPR003340 GO:0003677
Bisa04g0349 2196 SUPERFAMILY DNA-binding pseudobarrel domain 84 178 IPR015300 -
Bisa04g0349 2196 Pfam Autophagy-related protein C terminal domain 2094 2187 IPR015412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0349 Bisa-ChrBisa04 6297893 6315440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0349 67 172 B3 DNA Binding Superfamily AT5G42700 54.717 7.21e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa04g0349 Chorein_N 7e-13 No_clan