Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0343 ATGGCTCAGCCCACCAACAATGCCGATCTGAATCAGCACCAGCACCAGCAGCAGTGGGCGACGCAGCCGGCGCATCACTATCAGCAGCAATGGATGGCTACGCAGTACCCGGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCCCAGCATTACATGCCCTATGTCCACCATTACCCCCCTCCTCATCCTCATCCTCACCAGCAGCAGCAGCAGCAGCTGAAGCCCCAGCAGCCGCCGCCGCAGCAGCATCAGCTGCAGCAACAGAAGCAGGGGTCCACCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCACTGGATGGACGAGAATTATCTCCATAACTGTTTTGCTCATACAGGAGAGGTTTTGTCTGCCAAGGTTATACGCAATAAGCAAACTGGCCAGTCTGAGGGATATGGATTTATTGAGTTTTATTCGCGTGCAACAGCTGAGAAAGTTTTGAACAGTTACAATGGTGCTGTGATGCCAAACACTGATCAGCCCTTTCGTCTGAATTGGGCGACATTTAGTGCGGGTGATAGGAGATCTGATTCTAGTTCTGATCTGTCTATATTTGTTGGGGACTTGGCCGTTGATGTTACTGACGCTATGCTGCTGGAATCCTTTTCTAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCATTGATTCAAACACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAAATGAGAGGACAAGGGCCATGACTGAGATGAATGGAGTTTATTGTTCAACAAGGCCCATGCGAATAGGTGTTGCAACCCCCAAGAAATCCTATGGATATCAACAACAATATTCTTCCCAAGCTGTGGTGTTAGCTAATGGCTATTCATCTAATGGTGCTACTGCCCAAGGTTCCCAACCTGATGGGGACTCGAGTAACACAACTATTTTCGTTGGAGGACTTGATTCTGATGTCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGCGAAGTTGTCTCTGTCAAGATACCAATGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAAAATGCTGAGGAAGCAATTCAGGCATTAAATGGGACCATAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACGGATTCTAACGGAGGTCACTATGGAGGCCATGGATATGCTATGAAACAAAACCAGGATATCGGTATGAACGTTGCTTCTTGA 1260 0.4738 MAQPTNNADLNQHQHQQQWATQPAHHYQQQWMATQYPAAAMAMMQQQMMMYPQHYMPYVHHYPPPHPHPHQQQQQQLKPQQPPPQQHQLQQQKQGSTDEIRTIWLGDLHHWMDENYLHNCFAHTGEVLSAKVIRNKQTGQSEGYGFIEFYSRATAEKVLNSYNGAVMPNTDQPFRLNWATFSAGDRRSDSSSDLSIFVGDLAVDVTDAMLLESFSSRYSSVKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSTRPMRIGVATPKKSYGYQQQYSSQAVVLANGYSSNGATAQGSQPDGDSSNTTIFVGGLDSDVSDEDLRQPFLQFGEVVSVKIPMGKGCGFVQFSDRKNAEEAIQALNGTIIGKQTVRLSWGRSPGNKHWRTDSNGGHYGGHGYAMKQNQDIGMNVAS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0343 419 FunFam Polyadenylate-binding protein RBP47B 100 180 - -
Bisa04g0343 419 Gene3D - 190 290 IPR012677 -
Bisa04g0343 419 Gene3D - 295 416 IPR012677 -
Bisa04g0343 419 FunFam Polyadenylate-binding protein RBP47 295 411 - -
Bisa04g0343 419 MobiDBLite consensus disorder prediction 1 22 - -
Bisa04g0343 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Bisa04g0343 419 CDD RRM2_SECp43_like 196 272 - -
Bisa04g0343 419 SUPERFAMILY RNA-binding domain, RBD 178 292 IPR035979 GO:0003676
Bisa04g0343 419 MobiDBLite consensus disorder prediction 60 97 - -
Bisa04g0343 419 FunFam Polyadenylate-binding protein RBP47B 182 284 - -
Bisa04g0343 419 Gene3D - 62 189 IPR012677 -
Bisa04g0343 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 385 IPR000504 GO:0003723
Bisa04g0343 419 MobiDBLite consensus disorder prediction 71 97 - -
Bisa04g0343 419 CDD RRM1_SECp43_like 102 182 - -
Bisa04g0343 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Bisa04g0343 419 MobiDBLite consensus disorder prediction 298 317 - -
Bisa04g0343 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 86 389 - -
Bisa04g0343 419 CDD RRM3_NGR1_NAM8_like 312 383 - -
Bisa04g0343 419 SUPERFAMILY RNA-binding domain, RBD 304 405 IPR035979 GO:0003676
Bisa04g0343 419 SMART rrm1_1 314 381 IPR000504 GO:0003723
Bisa04g0343 419 SMART rrm1_1 195 269 IPR000504 GO:0003723
Bisa04g0343 419 SMART rrm1_1 102 177 IPR000504 GO:0003723
Bisa04g0343 419 SUPERFAMILY RNA-binding domain, RBD 62 182 IPR035979 GO:0003676
Bisa04g0343 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 261 IPR000504 GO:0003723
Bisa04g0343 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 169 IPR000504 GO:0003723
Bisa04g0343 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 378 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0343 Bisa-ChrBisa04 6171701 6177225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0343 100 382 Eukaryotic Initiation Factors Gene Family AT2G23350 28.472 2.00e-28 115