Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0280 ATGGAGGACTATATGAGCAGCGAAGACGATTACCAGTACTCTGATCAGGAGGATTTCGTCGACGACTATGGAAACGAGGAGGACTCCGATAATGATATGGCCGCTGACAAGGGCCCCACAACGAAGGTGATTAAAAAGGAATCAATTCTATCAGCACAGAAGGAGGATTTACGCAGAGTGATGGACTTGTTATCAGTGAAAGAGAGTCACGCACGTACACTTCTTATTCATCATCGCTGGGATGTGGATAATTTGTTTGCAGTGTACGGAGAAAAGGGGAAAAATATTTTGTTTGCTGAAGCTGGTGTTAGTGTGGAGGAACGTTGTGATTCAGAGTCATCAGTTCCTTCTTCAATAACGTGTGAAATCTGCATAGAGGATGTTCCCTGTGATGAAGCAGCAAGAATGGACTGTGGTCACTGTTATTGCAACAACTGTTGGATAGAACATTTCATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAAGTGCATGGCATACAAATGCAATGCTATTTGTGATGCAAATGTTGTAAGCACTCTAGTCAGCCAAAAGCACCCTGATATCGCAGAGAAATTTGAACGTTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGCCAAGTGGTGCCCGAGTGTTCCTCATTGTGGGAATGCAATCCATGTTGAGGAGGATGGGCTATGTGAGGTAGAATGTTCATGTGGTTTTCAATTCTGTTTTCGTTGTTTGTCCGAAGCACATTCGCCTTGTTCGTGTGCGATGTGGGAGCTTTGGGCTAAAAAGTGTCTTGATGAATCAGAAAATGTCAATTGGATAACAGTTAATACAAAATCTTGTCCAAAGTGCCACAAATTTGTAGAGAAGAATGGTGGTTGCAACTTGGTCAGCTGTATTTGTGGCCAAGCTTTTTGTTGGCTGTGTGGTGGAGCCACTGGCAGAGATCATACTTGGACAACTATAGCCGGTCATAGCTGTGGTCGCTACAAGGACGAAGATCTAAAGGCCGAACTGGCTAAGCGTGATCTGCACCGGTATGTGCACTATCATAACCGCTATAAAGCTCACCTGGACTCCTTGACACTTGAAGGTAAACTGAAAGAATCTATGGAAGCAAAGATTGCTAATTCAGAAAAGAAGGATTCTTCTCTCAGAGACTTCAGCTGGGTAAATGATGGACTCGCCAGACTTTTCAGGTGTAGGCGTATCCTATCATATACATATCCATTTGCATTTTATATGTTTGGAGAGGGGTTTAAAGATCAATTGCCAGAGGAGGAAAGGTTAATAAAACAGAACTTATTTGAGGATCAGCAACAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCCAAATTTTTGGAGGAGCCCTTTGATCAGTTTAATGATGATAAGGTTATTGAGATAAGGTTGCAGGTTCTCGATCTGTCTAGAACTGTTGACAGACTCTGTCGGGGAATGTATGAGTGCATCGAGAATGATTTACTGGGCCTTCTCTCACTTGACATGATAGCTCCATACAAGTCAAATGGCATAGAGAAGGCAGTAGAAGAGCAATGA 1560 0.4244 MEDYMSSEDDYQYSDQEDFVDDYGNEEDSDNDMAADKGPTTKVIKKESILSAQKEDLRRVMDLLSVKESHARTLLIHHRWDVDNLFAVYGEKGKNILFAEAGVSVEERCDSESSVPSSITCEICIEDVPCDEAARMDCGHCYCNNCWIEHFIVKINEGQSKRIKCMAYKCNAICDANVVSTLVSQKHPDIAEKFERFLLESYIEDNKRAKWCPSVPHCGNAIHVEEDGLCEVECSCGFQFCFRCLSEAHSPCSCAMWELWAKKCLDESENVNWITVNTKSCPKCHKFVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWTTIAGHSCGRYKDEDLKAELAKRDLHRYVHYHNRYKAHLDSLTLEGKLKESMEAKIANSEKKDSSLRDFSWVNDGLARLFRCRRILSYTYPFAFYMFGEGFKDQLPEEERLIKQNLFEDQQQQLEANVEKLSKFLEEPFDQFNDDKVIEIRLQVLDLSRTVDRLCRGMYECIENDLLGLLSLDMIAPYKSNGIEKAVEEQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0280 519 Gene3D - 250 496 - -
Bisa04g0280 519 Pfam Ariadne domain 332 517 IPR045840 -
Bisa04g0280 519 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 391 IPR031127 GO:0004842|GO:0016567
Bisa04g0280 519 MobiDBLite consensus disorder prediction 1 29 - -
Bisa04g0280 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Bisa04g0280 519 FunFam RBR-type E3 ubiquitin transferase 250 496 - -
Bisa04g0280 519 SUPERFAMILY RING/U-box 273 316 - -
Bisa04g0280 519 CDD Rcat_RBR_ARI1-like 275 328 - -
Bisa04g0280 519 MobiDBLite consensus disorder prediction 1 38 - -
Bisa04g0280 519 CDD BRcat_RBR_ANKIB1 199 263 - -
Bisa04g0280 519 CDD RING-HC_RBR_TRIAD1 120 172 - -
Bisa04g0280 519 Pfam IBR domain, a half RING-finger domain 270 312 IPR002867 GO:0008270
Bisa04g0280 519 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
Bisa04g0280 519 SUPERFAMILY RING/U-box 118 204 - -
Bisa04g0280 519 SUPERFAMILY RING/U-box 192 260 - -
Bisa04g0280 519 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Bisa04g0280 519 SMART ibrneu5 192 254 IPR002867 GO:0008270
Bisa04g0280 519 SMART ibrneu5 262 327 IPR002867 GO:0008270
Bisa04g0280 519 FunFam RBR-type E3 ubiquitin transferase 116 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0280 Bisa-ChrBisa04 5368014 5370998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0280 61 515 ARIADNE family AT2G16090 70.130 0.0 667