Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0254 ATGTCTGTTACGGAGCTCAAGGAGCGTCATTTGGCGGCCACGGAGACGGTGAACACTCTCAGGGAGCGGTTGAAGCAGAGGCGACTTTCTTTGCTTGATACAGATATTGCTAGGTACGCGAGGTCTCAAGGTAGAACTCCGGTTAGCTTTGGACCCACGGATCTGGTTTGCTGTAGAACTTTACAGGGTCATACAGGAAAGGTACATTCATTGGATTGGACATCTGAGAAGAACCGAATTGTTAGTGCATCCCAAGATGGCCGTCTAATAGTGTGGAATGCTCTAACAAGCCAGAAAACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACCTGTGCATTCTCACCAACTGGTCAGTCTGTTGCATGCGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTGAATTCCCCCACTGACAGGGATGGGAATACATCTGTTTCGCGAATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGACACTCACCTGATCACCAGTTCGGGTGATCATACATGTATTTTGTGGGATATTACTACAGGCCTTAGAACGTCTGTCTTTGGAGGTGAATTTCAGTCTGGACATACTGCAGATGTACTCAGCGTTTCTATTAATGGATCCAACTCAAGAATGTTTGTATCTGGTTCTTGTGATTCAACTGCCCGATTGTGGGATACTCGTGTGGCAAGCCGAGCTGTCCGGACATTTCATGGGCATGAGGGAGATGTCAATGCTGTTAAATTCTTTCCAGATGGAAACAGATTTGGAACTGGTTCAGATGATGGAACTTGCCGATTGTTTGACATTAGGACTGGGCACCAACTTCAAGTGTACTACCAACAGCACAGTGACCCACATGTGACCTCCATTGCATTCTCTATATCAGGAAGACTTCTTTTTGTTGGATACACAAATGGTGATTGCTATGTTTGGGACACTTTATTGGCTAAGGTGGTCTTGAATTTAGGATCTCTTCAAAACTCTCACGAGGGCAGGATCAGCTGTTTAGGTTTGGCAGCTGATGGAAGTGCCTTGTGTACAGGAAGCTGGGACTCAAACTTAAAGATATGGGCATTTGGAGGGCAAAGAAAGGTGGTTTGA 1125 0.4551 MSVTELKERHLAATETVNTLRERLKQRRLSLLDTDIARYARSQGRTPVSFGPTDLVCCRTLQGHTGKVHSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRDGNTSVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDHTCILWDITTGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDPHVTSIAFSISGRLLFVGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRISCLGLAADGSALCTGSWDSNLKIWAFGGQRKVV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Bisa04g0254 374 PIRSF GNBP_B 1 368 - -
Bisa04g0254 374 Gene3D - 3 366 IPR015943 GO:0005515
Bisa04g0254 374 SMART WD40_4 96 135 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 145 185 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 192 233 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 237 276 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 279 320 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 54 93 IPR001680 GO:0005515
Bisa04g0254 374 SMART WD40_4 326 366 IPR001680 GO:0005515
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Bisa04g0254 374 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Bisa04g0254 374 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Bisa04g0254 374 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Bisa04g0254 374 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Bisa04g0254 374 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 366 IPR016346 GO:0007165
Bisa04g0254 374 Coils Coil 3 23 - -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 374 - -
Bisa04g0254 374 FunFam Guanine nucleotide-binding protein subunit beta 2 366 - -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 365 IPR001680 GO:0005515
Bisa04g0254 374 CDD WD40 57 366 - -
Bisa04g0254 374 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Bisa04g0254 374 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Bisa04g0254 374 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Bisa04g0254 374 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Bisa04g0254 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Bisa04g0254 374 SUPERFAMILY WD40 repeat-like 51 365 IPR036322 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 287 320 IPR001680 GO:0005515
Bisa04g0254 374 Pfam WD domain, G-beta repeat 336 365 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0254 Bisa-ChrBisa04 4943049 4948076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0254 92 367 U-box Gene Family AT1G04510 23.476 3.08e-12 65.9