Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0193 ATGCACAGAAGGTTTTCCACTCTCATCGATTATTGTGTCGAAATTGAGGGTCTTTTGAAGCTCTTTCTGCTGCGAATTGCATATCCAATTCGGGTGTGTGGGGTGAAGAGTGAGGAAGGAAGGCCCAATGATATGGAGTACCATGCTTCCAATGTATACCATCCTCTCATTGTGTCTCATGCTGGAAGCATTGATGTAAAACTTGAAAAACATCTGGGTGGTATAGATACCGTTGGAAAAGATAAAGGTGTTTATATTGGTATTCAAGAGGAAGACGCTTCTCAGGTTGATACAAAGGATGACCTGGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTGGATCCTCTACCTGATGAAGAAGAAAATAAAGGTGGGGAGGAGGAGGACTGTGATCACTCTTTTGTTTTGAAAGATGATCTTGGTTATGTTTGTCGCGTCTGTGGGGTTATTGGCAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGTACAAGAACATACATGCCGGATTCATGGAATGCCAAAAATAGAGCAGCACCTGAGTTATCCGGACTTAAATTTGGTGAAGATGATCTAGTGGTGGCTGAAATCTCTGCACATCCCAGGCATATGAAGCAAATGAAACCTCATCAGGTTGAAGGATTTAATTTTCTTGTCAGAAACCTTGTGGGTGACAATCCTGGGGGCTGCATATTGGCCCATGCTCCAGGATCAGGGAAGACATTCATGATAATATGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTAATGCTAGACCACTTGTGGTTCTTCCGAAGGGGATTTTGGCTACCTGGAAAAAGGAGTTTCAAATATGGCAAGTGGAGGACGTGCCACTGTATGATTTTTACTCAGTGAAGGCAGACAGTCGAGCTCAGCAACTGGAAGTGTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTCTTTTTAGGATACAAGCAATTTTCTTCAATTGTCTGTGATAGTGGAACTAGCAATGTATCCATGTCTTGCCAAGAGATATTGCTTAAGGCTCCTTCAATTCTAATTTTAGATGAGGGACACACACCAAGGAATGACAATACTGACATGGTTCAATCCCTTGCCAAAGTACAAACTCCTCGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTCAAAGAGGTGTTTAGCATTTTAAACCTTGTGCGACCGAAGTTTTTATGTTCAGAAACATCACGACCTATTGTCAGGCGCATTCTGAGTAGAGTTGATGTACCAGGTAAGAAAAAATTCTTTGACCAGGTTGAAATTACTTTGCAAAATGACCCCGATTTCAAAAGGAAAGTCGCTGTCATTCAAGATTTGCGTGAGATGACCAACAAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTAGATTTTACTGTTGTGCTGAATCTTACCCCTCGGCAGAAGAATGAAGCTCAGAAACTAAAGCACTTGGCCAGAAAGTTTAAGATAAGTTCAGTAGGGAGTGCTGTTTATCTTCACCCTCAATTAAAACCCATGGCTGAAAAATGTGCTGAGAATTGTGCTTTATCTGATCATACAATGGATGAGAAAATAGATAGCCTAAATGTGGAGGATGGGGTCAAGTCAAAATTCTTTCTTAAAATGCTGAACCTATGTGATTCCAGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTTTGAAGTATTTAGAAAGATTATCTGTGAAAAAGAAGGGATGGAGTCCCAGAAAAGAAATCTTTGTTATCTCAGGAGAATCAAGCTCCGAAGAGAGAGAGTGGTCAATGCAGCAGTTTAACAATTCACCAGATGCCAAAGTCTTCTTTGGCTCGATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCATCGCGCATAATCATTTTGGATGTTCATCTAAATCCATCAGTTACTCGCCAAGCAATTGGCCGTGCATTCCGGCCAGGTCAGAGAAGGAAAGTCTTTGCATATCGGTTGGTTGCTGCTGATTCTCCTGAAGAGGAAGATCACGATACTTGTTTCAAGAAGGAATTAATTTCAAGAATGTGGTTTGAATGGAACGAGTATTATGGTTTTCATGATTTTGAAGTTGAGACTGTTGATGCCAAACAATGTGGTGATCTCTTTCTAGAAAGTCCATTGTTAAGGGAAGATATAAAAGTTCTGTACAAAAGTAATTCAGATCATCAAGCATGTCCTTCAACTGCCTCCAGTGTGGCTGGTCCTGAAGCTTATACTAACTAG 2322 0.407 MHRRFSTLIDYCVEIEGLLKLFLLRIAYPIRVCGVKSEEGRPNDMEYHASNVYHPLIVSHAGSIDVKLEKHLGGIDTVGKDKGVYIGIQEEDASQVDTKDDLEDIWREMSMAIECSKDVSVDPLPDEEENKGGEEEDCDHSFVLKDDLGYVCRVCGVIGRGIETIFEFQYKVKKSTRTYMPDSWNAKNRAAPELSGLKFGEDDLVVAEISAHPRHMKQMKPHQVEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIICFMQSFLGKYPNARPLVVLPKGILATWKKEFQIWQVEDVPLYDFYSVKADSRAQQLEVLKQWVEQKSILFLGYKQFSSIVCDSGTSNVSMSCQEILLKAPSILILDEGHTPRNDNTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFSILNLVRPKFLCSETSRPIVRRILSRVDVPGKKKFFDQVEITLQNDPDFKRKVAVIQDLREMTNKVLHYYKGDFLDELPGLVDFTVVLNLTPRQKNEAQKLKHLARKFKISSVGSAVYLHPQLKPMAEKCAENCALSDHTMDEKIDSLNVEDGVKSKFFLKMLNLCDSSGEKLLVFSQYLLPLKYLERLSVKKKGWSPRKEIFVISGESSSEEREWSMQQFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQRRKVFAYRLVAADSPEEEDHDTCFKKELISRMWFEWNEYYGFHDFEVETVDAKQCGDLFLESPLLREDIKVLYKSNSDHQACPSTASSVAGPEAYTN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0193 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 414 IPR027417 -
Bisa04g0193 773 Gene3D - 482 739 IPR027417 -
Bisa04g0193 773 Pfam Helicase conserved C-terminal domain 566 674 IPR001650 -
Bisa04g0193 773 Gene3D - 191 432 IPR038718 -
Bisa04g0193 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 714 IPR027417 -
Bisa04g0193 773 MobiDBLite consensus disorder prediction 754 773 - -
Bisa04g0193 773 CDD SF2_C_SNF 558 686 - -
Bisa04g0193 773 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 90 752 IPR044567 GO:0080188
Bisa04g0193 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 561 724 IPR001650 -
Bisa04g0193 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 412 IPR014001 -
Bisa04g0193 773 SMART ultradead3 215 425 IPR014001 -
Bisa04g0193 773 Pfam SNF2-related domain 239 500 IPR000330 GO:0005524|GO:0140658
Bisa04g0193 773 SMART helicmild6 587 675 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0193 Bisa-ChrBisa04 3293156 3307797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0193 572 693 RAD5 or RAD16-like Gene Family AT5G43530 36.066 3.02e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa04g0193 SNF2_N 1.3e-20 CL0023