Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0192 ATGGAATCGCCAGCAGTTGCAATACTACCAGCTAAGCGCCCTTCAAGCGGGTTTGATTCAGAGAGAACAAAAAGACTGAAACTATCGAATTACAGCACAACAAACTCAGTGCATAAGAATGATAAAATTGACTTGGAGACACCTAAGAATTCTTCAAATGTTGTAGATTATAGCAATCCATATGCCATTGCTGACTTCCTGGATGGTGTAAGCTGTGGAAAATTTGGAAGTGTCACAAAGGATATAGAGGCCCTTGTAACTCGAAAAATGCAAATATTGAGCCCTTATTTTGCAAAATTTCCCATACTTTTAAATCAATTGATGGAAGGGGGAATGAAACGTAATGAAGAAACTGATAAGGGGAAAACTCAACAAGGTAATGGTTTTGCACATCAAAAAATCATAGATTTGGAGCAGGAGCACATGACAAAGGATGCTCCAAAAGCATCATTGCCTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGACCAGAAACCTTATACACCATTTCAAGAAGTTGTACTGCCAAAAGCTGCAGGCCAATCTACCACAAAGGATATAGTTGAGTACCATGCTTCCAATGCATACCGTCCTCTCATTGTGTCTCCTGCTGGAAGCATAGATGTAAAACTTGAAAAACATCTGGCTGGTATAGATAGCGTTGGAAAAGATAAAGGTGTTTATATTGGTATTCAAGAGGAAGACGCTTCTCAGGTTGATACAAAGGATGATGGCCTGGAAGATATTTGGAGTGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGCTGTGGATCCTCTACCTGATGAAGAAGAAAATAAAGGTTGGGAGGAGGAGGACTGCGATCACTCTTTTGTTTTGAAAGATGATCTTGGTTATGTTTGTCGTGTCTGTGGGGTTATTGGCAGAGGAATTGAGACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGTACAAGAACTTACATGCCGGATTCATGGAATGCCAAAGATAGAGCAGCACCTGAGGTATCTGGACTTAAATTTGGTGAAGATGATCTAGTGATGACTGAAATCTCTGCCCATCCCAGGCATATGAAGCAAATGAAACCTCATCAGGTCGAAGGATTCAATTTTCTTGTCAGAAACCTTGTGGGTGACAATCCTGGGGGCTGCATATTGGCCCATGCTCCAGGATCTGGGAAGACTTTCATGATAATCAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCCAATGCTAGACCACTTGTGGTTCTTCCGAAGGGGATTTTGGCTACCTGGAAAAAGGAGTTTCAAATCTGGCAAGTGGAGGACATTCCGCTCTATGATTTTTACTCAGCAAAGGCAGACAGTCGAGCCCAGCAACTGGAAGTGTTAAAACACTGGGTGGAGCAGAAGAGTATTCTATTTTTAGGATACAAACAATTTTCTTCAATTGTCTGTGATAGGGGAACTAGCAATGTATCCTTGTCTTGCCAAGAGATACTGCTTAAGGCTCCTTCAATTCTAATTTTAGATGAGGGACACACACCAAGGAATGACAATACTGACATGGTTCAATCCCTTGCCAAAGTACAAACTCCTCGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTCAAAGAGGTGTTTAGCATTCTAAACCTTGTGCGACCAAAGTTTTTACGTTCAGAAACTTCACGACCTATTGTCAGGCGCATTCTGAGTAGAGTTCATGTACCAGGTCAGAAAAAATTCCATGACCAGGTTGAAATTACTTTGCAAAAAGACCCTGATTTCAAAAGGAAAGTGGCTGTCATTCATGATTTGCGTGAAATGACCAGCAAGGTACTTCATTACTACAAAGGAGACTTTCTTGATGAGCTTCCTGGTCTTGTAGATTTTACTGTTGTGCTGAATCTTACCCCTCGGCAGAAGAATGAAGCTCAGAAACTAAAGCACTTGGCCAGAAAGTTTAAGATAAGTTCAGTAGGGAGTGCTGTTTATCTTCACCCTAAGTTAAAACCCATGGCTGAAAAATGTGCTGAGAATTCTGCTGTATCCGATCATACAATGGATGATAAAATAGATAGTCTAAATGTGGAAGATGGGGTGAAGTCAAAATTCTTTCTTAAAATGTTGAACCTATGTGATTCAAGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTTTGAAATATTTAGAAAGATTATCTGTGAAAAAGAAGGGATGGAGTCCCAGAAAAGAAATCTTTGTTATCTCTGGAGAATCAAGCTCTGAAGAGAGAGAGTGGTCCATGCAGCAGTTTAACAATTCACCAGATGCCAAAGTCTTCTTTGGCTCGATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCATCGCGCATAATAATTTTGGATGTTCATCTAAATCCATCAGTTACTCGCCAAGCAATCGGCCGTGCATTCCGGCCAGGTCAGACAAGGAAAGTCTTTGCATATCGGTTGGTAGCTGCTGATTCTCCTGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAGAATGTGGTTTGAATGGAACGAGTATTGTGGTTTTCATGATTTTGAAGTCGAGACTGTTGATGCCAAACAATGTGGTGATCTCTTTCTAGAAAGTTCATTGTTAAGGGAAGATATAAAAGTTCTGTACAAAAGAGTTGACCCTATTATTACATTTTTCCTCTTTTACATATTAAACAAAACATACATACAGAGTAGCAGATCTTCCAATAAATTTCAGGTTATTACAAGTTTACAACAATTATTGTTCAGTGTCCAATCATTGGGGGTTTCTACTATACAGGATTTCCTTCTATCCCTGTCAAGCATGCTGGAGGAACCCAGATCACTGATCAGCACTCATCATTCATTTTCTCCGATTGCAACCTCAGAAGCACCAATACCTTACCTTACGAAGACAGCTGAATACGACACTTCAAATTACACCTAA 2985 0.3983 MESPAVAILPAKRPSSGFDSERTKRLKLSNYSTTNSVHKNDKIDLETPKNSSNVVDYSNPYAIADFLDGVSCGKFGSVTKDIEALVTRKMQILSPYFAKFPILLNQLMEGGMKRNEETDKGKTQQGNGFAHQKIIDLEQEHMTKDAPKASLPVVIIDSDEEDDRDQKPYTPFQEVVLPKAAGQSTTKDIVEYHASNAYRPLIVSPAGSIDVKLEKHLAGIDSVGKDKGVYIGIQEEDASQVDTKDDGLEDIWSEMSMAIECSKDVAVDPLPDEEENKGWEEEDCDHSFVLKDDLGYVCRVCGVIGRGIETIFEFQYKVKKSTRTYMPDSWNAKDRAAPEVSGLKFGEDDLVMTEISAHPRHMKQMKPHQVEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSAKADSRAQQLEVLKHWVEQKSILFLGYKQFSSIVCDRGTSNVSLSCQEILLKAPSILILDEGHTPRNDNTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFSILNLVRPKFLRSETSRPIVRRILSRVHVPGQKKFHDQVEITLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTPRQKNEAQKLKHLARKFKISSVGSAVYLHPKLKPMAEKCAENSAVSDHTMDDKIDSLNVEDGVKSKFFLKMLNLCDSSGEKLLVFSQYLLPLKYLERLSVKKKGWSPRKEIFVISGESSSEEREWSMQQFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTRKVFAYRLVAADSPEEEDHNTCFKKELISRMWFEWNEYCGFHDFEVETVDAKQCGDLFLESSLLREDIKVLYKRVDPIITFFLFYILNKTYIQSSRSSNKFQVITSLQQLLFSVQSLGVSTIQDFLLSLSSMLEEPRSLISTHHSFSPIATSEAPIPYLTKTAEYDTSNYT 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0192 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 574 IPR027417 -
Bisa04g0192 994 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 191 897 IPR044567 GO:0080188
Bisa04g0192 994 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 870 IPR001650 -
Bisa04g0192 994 Pfam SNF2-related domain 385 613 IPR000330 GO:0005524|GO:0140658
Bisa04g0192 994 SMART ultradead3 361 571 IPR014001 -
Bisa04g0192 994 Gene3D - 628 885 IPR027417 -
Bisa04g0192 994 MobiDBLite consensus disorder prediction 1 21 - -
Bisa04g0192 994 Gene3D - 338 591 IPR038718 -
Bisa04g0192 994 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 558 IPR014001 -
Bisa04g0192 994 Pfam Helicase conserved C-terminal domain 713 820 IPR001650 -
Bisa04g0192 994 CDD SF2_C_SNF 704 832 - -
Bisa04g0192 994 SMART helicmild6 733 821 IPR001650 -
Bisa04g0192 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 859 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0192 Bisa-ChrBisa04 3263374 3272289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0192 718 839 RAD5 or RAD16-like Gene Family AT5G43530 36.066 9.01e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa04g0192 SNF2_N 3.8e-20 CL0023