Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0190 ATGGGGAAGAAGAAGGTGAAGGAAAGTGGAGGAAAAGAGCACTGCTCCTCGACTGTGTTTGTCTCCAACTTTCCTTATTCATTCACCAACTCTCAGCTGGAGGAGAGTTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAAGGCTCAGCCCAGCATCGTGGGTTTGGTTATGTTCAATTTGCTGTTGATGATGATGCTAACCGTGCAATTGAGTTGAAGAATGGTGCATCTGTTGGGGGTCGAAAAATTGCAGTAAAGCATGCTACGCCTCGCCCTCCCCGTGAAGTGAGACAATTGAAGTCCAATCAAGTGGATAAGACTGATGATCTCCCCAAGTCAAAAGATGATGATGGTGATGGTGACTTTTCTGCAGCAGACAAGCCTGCTTCAGTTATTAAGGAAAAAGTTTTAAATAAAGAAAAATCAAGGAAGACTACGGAAGTAAAAAAAGCAGCTCTTTGTGGTGATATAGCTGATGAGGGGGGTTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGTGGTCTTATTAATTCTGATATGGCTGAAGCTGTTCACTGCCAAGCAAGGGAAGTTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGAAAGAATTTGAGAAACATGGTCTCCTGCAAGATGGCTGTAAATTGGATGCTTCAGCTGTGCTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCAATGTTACATCAGAAGGACATAGGAGGAGGAACTGTTTGGGCACGTCAATTGGGTGGAGAGGGCTCCAAGACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGTCAAAGAAAATGAAGTAAAAGATGTGTTTTCATCTGCAGGGTTTGTGTGGGATGTATTTATTCCTCACAAGTCAGATACAGGTCTGTCTAAGGGTTTTGCATTTGTGAAGTTCACATGCAAGCAAGATGCGGAAAATGCTATTCAGAAGCTCAACGGATCAAAGTTTGGCAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAGAAGATATATAGCAGTGATACAAATGCTTCACTTTCTTTAGAAAATGGACAACAAAAGGTGAGAGATGAAGACGGTAGTAGTTCTGAGGACGATTTAGAGGATGATGTCAAGCATACAGGCAAACAGTCCCGTCATGGAGACGATAGTGATCCAGATGACTCCAATTCCTCTGAGGAAGAAGATGTTCCATCTGAAGTTAATTTTGATAAGGAAGCAGACATTGCAAGGAAGGTTCTTAAAAATTTAATCACATCCTCCACCAAAGGAACATCAGAAAATGATGGCTCTATAGTGTCCAAGGAAAATAAGGAGTCAAAATCAAATAAAAAATTTAACGAGGTGGATAAAAAATCATCTAAGGAGCTAGAAAAGGTTACAGGTGTTTCTGAGCCTGAAATCTTGGACAGAAGTAAGGTATCAAATGTTAAGGAAACAGAAGAAGAAGAAGATTTGCAGGGAACGGTTTTCATAAGTAATATCCCCTTTGACTGTGATAATGAAGAAGTGAAGCAACGATTCTCGGGATTTGGGGAAGTGGAATCCTTTGTTCCAGTCCTCCACCAGGTTACCAAGCGGCCAAGAGGAACTGGTTTTCTGAAGTTTAAAACGGCAGATGCAGCTGATGCTGCAGTTTCAACAGCTAGTGCTGCTTCTGGCTTGGGTATTTTTCTCAAGGGTAGGCCATTAAAAGTTTTGAAGGCTTTAGATAAGAAATCAGCTCATGACAAGGCACTGGAGAAGGCCAAAAATGACAATCATGATCACCGCAATCTCTACCTGGCAAAGGAGGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGTGTTTCAGCTAGTGATATGTTAAAACGCCAGGAGTTGGAAAGGAAAAAGACAACAAAGCTCCAGTCACCAAATTTTCATGTTTCAAGAACTAGACTCATAATCTACAACTTACCGAAGTCAATGACTGAAAAAGAGCTCAAGAAGCTTTGCATTGATGCAGTCACCTCAAGAGCTACCAAGCAAAAACCTGAAATTCGGCAGATGAAGTTCTTGAGGGATGTAAAGAAAGGAAAGGTTGTTACAAAAAACCATTCACGTGGAGTTGCTTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAATAATAATCCAGAAACTTTTGGTCCTGAACATCGACCGATTGTGGAGTTTGCTCTTGATAATGTTCAAACTCTGAAACTTCGGAAAGCAAAGCTGCAATATCAGCAGCAAGCTGCTGCTCATGGTGATCGCAATGCCAAAGAAAGTGAGGAACCCCAAATTTCAGGCACTGACACCAATAAAAAGGAGAGAAAACGAAAAGCTGGGGATCACGGAAAACCAGAAAATGATTCCGCCGGCGACAAAGATGAATCAGGAACTACAATGCCAAATGGAAATGCTGCCGGAGCACGCAATTCCAAAAGACAGAAAGGCAACCATAAAAATAAGAAAGCAGAAGGGATAACACAAAAAGAAAATTCAAATGGCCGGAATCGTGGTGGTAAGACATCAAACACTGATATTGGCACCAACAAAACAAAACCTGGTAGAAAAGAAGAGCTTGGATTGAAAAAGAGAAAGGCGCAAAATCAAGCAGAAGCAGGGGAAAAAGTTTCAAAGAAACGATCAAAAAAGAACAAAGTGCCTGTGGGGAAAGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACAACAGGGTTTGCAAGGGAATGATGGTGAGAAAAAACCTTCCAAACAGCTTAGGAAATGGTTTGAAACATAA 2856 0.4174 MGKKKVKESGGKEHCSSTVFVSNFPYSFTNSQLEESFSEVGPIRRCFMVMQKGSAQHRGFGYVQFAVDDDANRAIELKNGASVGGRKIAVKHATPRPPREVRQLKSNQVDKTDDLPKSKDDDGDGDFSAADKPASVIKEKVLNKEKSRKTTEVKKAALCGDIADEGGCSEKQRVARTVIFGGLINSDMAEAVHCQAREVGSVCSIKYPLPRKEFEKHGLLQDGCKLDASAVLYTSVKSARASVAMLHQKDIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKVKENEVKDVFSSAGFVWDVFIPHKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLIAVDWAVPKKIYSSDTNASLSLENGQQKVRDEDGSSSEDDLEDDVKHTGKQSRHGDDSDPDDSNSSEEEDVPSEVNFDKEADIARKVLKNLITSSTKGTSENDGSIVSKENKESKSNKKFNEVDKKSSKELEKVTGVSEPEILDRSKVSNVKETEEEEDLQGTVFISNIPFDCDNEEVKQRFSGFGEVESFVPVLHQVTKRPRGTGFLKFKTADAADAAVSTASAASGLGIFLKGRPLKVLKALDKKSAHDKALEKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKTTKLQSPNFHVSRTRLIIYNLPKSMTEKELKKLCIDAVTSRATKQKPEIRQMKFLRDVKKGKVVTKNHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQYQQQAAAHGDRNAKESEEPQISGTDTNKKERKRKAGDHGKPENDSAGDKDESGTTMPNGNAAGARNSKRQKGNHKNKKAEGITQKENSNGRNRGGKTSNTDIGTNKTKPGRKEELGLKKRKAQNQAEAGEKVSKKRSKKNKVPVGKDVVDKLDMLIEQYRSKFSQQGLQGNDGEKKPSKQLRKWFET 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0190 951 MobiDBLite consensus disorder prediction 767 910 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 447 478 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 814 831 - -
Bisa04g0190 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Bisa04g0190 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 563 IPR000504 GO:0003723
Bisa04g0190 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Bisa04g0190 951 SUPERFAMILY RNA-binding domain, RBD 646 753 IPR035979 GO:0003676
Bisa04g0190 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Bisa04g0190 951 SUPERFAMILY RNA-binding domain, RBD 17 257 IPR035979 GO:0003676
Bisa04g0190 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 586 IPR000504 GO:0003723
Bisa04g0190 951 CDD RRM1_RBM28_like 18 96 - -
Bisa04g0190 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 655 768 IPR000504 GO:0003723
Bisa04g0190 951 MobiDBLite consensus disorder prediction 926 951 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 93 128 - -
Bisa04g0190 951 FunFam RNA-binding motif protein 28 654 749 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 436 478 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 849 869 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 774 813 - -
Bisa04g0190 951 SMART rrm1_1 656 747 IPR000504 GO:0003723
Bisa04g0190 951 SMART rrm1_1 504 582 IPR000504 GO:0003723
Bisa04g0190 951 SMART rrm1_1 18 91 IPR000504 GO:0003723
Bisa04g0190 951 SMART rrm1_1 272 345 IPR000504 GO:0003723
Bisa04g0190 951 SUPERFAMILY RNA-binding domain, RBD 496 589 IPR035979 GO:0003676
Bisa04g0190 951 CDD RRM4_RBM28_like 655 752 - -
Bisa04g0190 951 Gene3D - 259 398 IPR012677 -
Bisa04g0190 951 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 950 - -
Bisa04g0190 951 SUPERFAMILY RNA-binding domain, RBD 267 355 IPR035979 GO:0003676
Bisa04g0190 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Bisa04g0190 951 CDD RRM2_RBM28_like 272 348 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 363 420 - -
Bisa04g0190 951 Gene3D - 2 105 IPR012677 -
Bisa04g0190 951 Gene3D - 434 600 IPR012677 -
Bisa04g0190 951 Gene3D - 654 749 IPR012677 -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 870 898 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 402 416 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 87 130 - -
Bisa04g0190 951 MobiDBLite consensus disorder prediction 367 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0190 Bisa-ChrBisa04 3243566 3252042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0190 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 3.34e-07 51.6