Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0184 ATGACAACGAAGCTGAGCAGGGAAAGAACACCGGGTTCTAGAAGAAGACGCCGTAGGGACGAAGAAGATCATCGTCTTCATGATGATGATGATGATGTCTCTAAACGACACAAACACAACCCTTTTCAAGGAGGAGATATAGAGGAGTGGAAGTTTCCAGCATCGCTGAGTCAAACGGCGACGTTTCAGTGCGTGCTGGTTCGATCTATGGATGATTCAGTGAAGGAATACGCTTACCATACGAGTGTGAGTGTTGGAGGACACGTGTTTAGTGGTCTTCTTTACGATGAAGGCCTTCCCAAATTCAAACCCAGACGGCCCAATTTTCTGGCGGGAAAATCATGTCTTCCTCCCGCCATATCTAGCTGCAGAATACGCAAAAAGGTTCACTTTCTCTTCTTTCTCTCTATCGTGTGCTTGCTTCTTTCACAAACAGCCATGGCCTCCGATTCTTCTCCGACGAATTTCAACAATGGTGCTTCTTCTCCGGAAGATTCCTTTTCCAGCCCAATCGGCAATACATTATCGTCTCCTGGTGATGCAGCTCGCCGGAGAAGGCGGGGACGTTCTTCTACACCGTCGACCTTTGCGACTCCTCCACCTAGTCGATCCCGATTCGGCTCCTCGGATGCCACTCCAACTCCTACACGGTCCAGGCAAAGAGGAGGTGGCCGGAGGGCCTCCGTGTCTACTTCCGTTGCCGCCACACCCACCTCCACTGATGACGCGCCCATGTCTTCAGAAGGTGGCGAGGGCTACAATATGGACGATGTTAGGCCTACCTTCGTCTGGGGTACTAATATAAGCGTAGAAGACGTAAATGAGGCGATTCAGAGGTTCTTAAAGCACTTCAGAGAAGAGTCATCTCAGAGTGATGGATTGCAGCTGGAGGGGAAATATGAAAGGGCTATTAAACAGGTCATTGAAATTGAGGGAGATTCACTGGATGTAAATGCACACGACGTGTTTGACTATGATCCGGATTTGTATACGAAAATGATCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTTTGATGAATATGGTTAGTCGAATCAACCCGTTGTTTGAGAAGCACATTCAAACTCGAATTTTCAATCTCAGAACCTCAACATCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCACTGAAGGGAATGATTATACGATGTAGCTCAATCATACCGGAAATTAGGGAAGCTATCTTTAGATGTCTTGTGTGTGGATACTGCTCTGACCCGGTTGCTGTAGAGAGAGGACGAATAACTGAACCTACCATATGCTTGAGGGAAGAGTGTCAAGCCAGGAACTCCATGACACTGGTTCACAACCGATGCAGGTTTACAGACAAGCAAATTGTGAAGCTCCAGGAGACACCTGATGAGATACCTGAAGGAGGAACACCACACACAGTGAGCTTGCTGATGCATGACAAGCTGGTGGATGTAGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCCATGAGTGTCAGGGTTGGACCAACTCAAAGAACAGTTAAATCATTGTTCAAGACTTATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCAAGGATGCTGGCAGAGGATGCTATGGATGTTGATAATAACCTGAGCAGAAATACAGAAGAAATTCATTTTGATGAAGAAAAGGTGGCTCAACTGAAAGAGCTCTCAAAACAGCCAGATATTTATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGACGATGTCAAGAAAGGTCTTCTTTGCCAGCTTTTTGGTGGCAATGCTTTAAAGTTGGCATCTGGTGCTACCTTCCGTGGTGATATTAATATCTTACTTGTTGGGGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACATAAGCTATCCCCTCGTGGCATTTACACCAGTGGGAGGGGGAGCTCTGCAGTTGGACTGACTGCTTATGTGGCCAAAGATCCAGAATCAGGCGAAACTGTCCTAGAGAGTGGTGCACTAGTTTTAAGTGACAAAGGCACCTGCTGTATAGATGAATTCGACAAAATGTCTGACAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCGGGCATTATTGCTTCTCTCAATGCTAGGACTTCGGTGTTGGCATGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCTACGCTTCTGTCCAGGTTTGATTTGATCTACTTGATTCTGGACAAGGCTGATGAACAGACAGACAGACGACTTGCCAAGCATATTGTTTCCTTGCACTTCGAGAATCCTGAGAGCATGGAGCAAGATGTGTTGGACCTTCCTACATTAACTGCTTATGTGAGTTATGCCCGAAAGCATATACACCCACAGCTATCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTTGAAATCAGAAGAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCAAGGCAGATTGAGAGTCTGATACGGCTTAGTGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACGGGGACCATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGTTGAGACGGGAGAGCCTCATACAAGCAACCCGTAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTAGTGGAGTTACTGGAAGAGTTGAAGAGGCAGAACACTAGCGAAGTCCACCTTAATGACTTAAGGAATGCAATTGCTAGTCTAGCCAGCGAAGGATTTGTTGCTCTGCATGGGGACAGTGTAAAAAGATCGTAA 2955 0.4596 MTTKLSRERTPGSRRRRRRDEEDHRLHDDDDDVSKRHKHNPFQGGDIEEWKFPASLSQTATFQCVLVRSMDDSVKEYAYHTSVSVGGHVFSGLLYDEGLPKFKPRRPNFLAGKSCLPPAISSCRIRKKVHFLFFLSIVCLLLSQTAMASDSSPTNFNNGASSPEDSFSSPIGNTLSSPGDAARRRRRGRSSTPSTFATPPPSRSRFGSSDATPTPTRSRQRGGGRRASVSTSVAATPTSTDDAPMSSEGGEGYNMDDVRPTFVWGTNISVEDVNEAIQRFLKHFREESSQSDGLQLEGKYERAIKQVIEIEGDSLDVNAHDVFDYDPDLYTKMIRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCSDPVAVERGRITEPTICLREECQARNSMTLVHNRCRFTDKQIVKLQETPDEIPEGGTPHTVSLLMHDKLVDVGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMLAEDAMDVDNNLSRNTEEIHFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGATFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPESGETVLESGALVLSDKGTCCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESMEQDVLDLPTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERLRRESLIQATRNIIMEKMQIGGPSMRLVELLEELKRQNTSEVHLNDLRNAIASLASEGFVALHGDSVKRS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0184 984 Gene3D - 376 515 IPR012340 -
Bisa04g0184 984 Gene3D - 553 893 IPR027417 -
Bisa04g0184 984 FunFam DNA helicase 556 894 - -
Bisa04g0184 984 Pfam Domain of unknown function (DUF702) 15 99 - -
Bisa04g0184 984 Pfam MCM P-loop domain 563 785 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 Gene3D - 894 975 IPR036388 -
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein family signature 704 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein family signature 676 690 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein family signature 755 763 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein family signature 616 631 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein family signature 728 740 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 CDD MCM4 578 887 - -
Bisa04g0184 984 Gene3D - 403 455 - -
Bisa04g0184 984 MobiDBLite consensus disorder prediction 151 256 - -
Bisa04g0184 984 ProSiteProfiles MCM family domain profile. 575 781 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 901 IPR027417 -
Bisa04g0184 984 ProSitePatterns MCM family signature. 684 692 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bisa04g0184 984 NCBIfam LRP1 C-terminal domain 51 99 IPR006511 -
Bisa04g0184 984 MobiDBLite consensus disorder prediction 191 245 - -
Bisa04g0184 984 MobiDBLite consensus disorder prediction 151 176 - -
Bisa04g0184 984 MobiDBLite consensus disorder prediction 1 46 - -
Bisa04g0184 984 MobiDBLite consensus disorder prediction 14 45 - -
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 398 411 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 449 461 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 591 602 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 889 898 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bisa04g0184 984 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 737 754 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bisa04g0184 984 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 274 947 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 Gene3D - 267 371 - -
Bisa04g0184 984 Pfam MCM N-terminal domain 275 372 IPR027925 -
Bisa04g0184 984 FunFam DNA helicase 403 455 - -
Bisa04g0184 984 SMART mcm 372 889 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bisa04g0184 984 Pfam MCM AAA-lid domain 801 887 IPR041562 -
Bisa04g0184 984 Pfam MCM OB domain 376 505 IPR033762 -
Bisa04g0184 984 SUPERFAMILY Nucleic acid-binding proteins 295 526 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0184 Bisa-ChrBisa04 3156541 3171184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0184 147 983 Core DNA Replication Machinery Family AT2G16440 75.679 0.0 1297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bisa04g0184 MCM 6.4e-100 CL0023