Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0183 ATGGAAAACCAATCCGCATCAATGGAGTTTCTTCTCCTCGAAGAAGTCCAGTTCTTGGGCGTGAAAGACGATGCTCTGTCTCAGTGGGAATTGGTCAACGTGCTGGACAGGGAAGAAGTAGGGGGAGACGAGAATTGCGATGATGGCGATAGTAGTGTCCAGGTTGGGTTTAATCCTTGGGATTCATTGGAACTTTTGAATGTTACTCCGACGGATGGCTCGATTGTATGTGAAGGCATTAATTATCGCCTTCTTCATCCCGATATGGAAATGAAGGAGGATCGCGATGTTGACGACGATGGCATCGGCGATCGTCGTTTCGATGATGTGAACCACGGGCATCAATTCATCGATGATGATGCAGATCATTATGGTGATGATGATAATGATGACGATGGAGATGGCGATGACGATGACGGGTATGGTTTGGACGATGAGCTTGTTCCCTGGTCTGTGAGCAGCAAGGTTGGGAGGCAGAGGATGAGGAAGTTGGGGAAAAGGTCGTTTTCGAAGATGCACAATTCCAAGAGGTCGCCGTATCTGTTTGTGAGACCAGGAAGAAAACCTAATCTGAAAATCTCCTCAAGCTCTCAGCTCAGACACAGTCAATGCGATCGGCGTCCCGTTCGAGCTCTACTGCCCTCTGCTCACCCTCTCACCATCTCGCCGGCCGCCGTTTCCATCTGCTCTCGTCAACGTCCGCCGTCCACCGTTGCCGTTTCCGTCGCCGTTTGCTCAGGTTCTATGGAGATATCCTTGTTAAAGGTGCTTGTTAATGGGATATCCTCATTTTTTCATCTATCATTTTCTGGGAACATGAACTCAGAACTTGTTTCAGAGTATTACCAAAAGGCAGAGCAGACACTTAAGTTGTTGAAGCCTATAGTTGATGCATTTGTTAACTCTGAATTAGCTTCTGATGAAGTGCTTAATAAGTCATTTGAAGAAGTGGGTCAGGCTGTTGATGAGTTGAGGGAACTTTTTGGGAACTGGCACCCATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAATCCCTGATATCTAGGATACAGACTTCAGGACTCAATATCTTCCAGCAGCTGAAGACTTCTCAACTACCTGTCCCCGATGAACTGAATACTATGCATCTTGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGACATGAGGAGGAAACAACAATAGTTATTAAAGAAGCTATTAGTGAACAAGTGGAAGGTGTAGGACCTAGTTCAAAGGTCCTGGTAGACATTGCTGAGACCCTGGGCCTGAGGTCTAACCAAGAGATTTTGATTGAGGCTGTAGCACTTGAAAAGTTGAAGGAGAATGCTGAACAAGCTGAAAAGACTGCAGAAGCTGAATATATTGATCAAATGATCACTATTGTAACTCGTATGCATGAACATCTTATTACGATTAAGCAAGCCCAAAGCTCTAGCCCAGTTCCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTCTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAATTGGATTGATCTTGGGCTTACTGTATGTCCAAAGACACGTCAGACTCTGGCTCACACAAACTTAATACCTAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAATAATGTGAAGCCAGTCGATCCTATTTTGTCTTCAAACTTAAATCAAGCATCTTTTCTTCATGGGTATATGGAGTCTGGTGCAACCAGGGAATCACCTGTTTTTGCTAATTCCAGGAGCAACCAGCCATCCTCACCTGAAACAGCTCGCTCTCGTTCTTTCAGTTCACCTGGTAAGAGCTTAACTTCTGGAGGAATCCACAGAGAGGGAACATCACCATTTCATCCCCGCTCAACTTCAGAAGGTTCCTTAAGTGGCATTGCTAATGGACAGTGTTTGGATATTGCAAGACTATCCCCAACTGGTTCTGATGATAGGTCTGGTAGCTCGGATGAAAGGAGTGAGGATTCAGCTGTTCAACCATCAATATCTCAATCTATAACTGAATCCTCCAATGCCTTAAGCCCTGAAAAGTCTCAAAGCCATGCTAGATCTGCTTCTGAATCCAGTGGACTTTCCAATGTTCAAGGAACACATGGTGATGGTAACAATACTTCTCAACTGTCAACCACTCCAGGCAACAGTAAGGAGACTTCTGTGGAGGCAAATTTAGATGCTACTGATGCTGCTTCCATCAGCGCTTCACAGAAAGAACCTGAGATCTTGCCCCGATTGGTGGAGACAAGGCCTCGAAACCAAACTATATGGCGGCGGCCATCAGAAAGATTTGCTCCTAGGGTGGTGCCCGCCGCTGGTGAAACAAGAGCTGATCTTTCTGGTATTGAAGTCCAAGTTCGGAGTTTGGTTGAGGATTTGAGGAGTTCTTCTCTTGATACTCAAAGGGAAGCAACAACAAAGCTTCGCCTTCTTGCTAAGCACAATATGGATAATCGACTTGTGATTGCAAGTTGTGGGGCCATTAACTTATTAGTTGACTTACTTCAATCAACCGATACTATGATCCAGGAAAATGCAGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGATCCTCTGATCCATGTCCTTGAGACAGGAAGCCCTGAAGCTAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTGATTGAGGAAAACAAGGTCAGGATTGGTAGGTCGGGCGCAATTAGGCCTCTAGTTGATTTATTAGGGAATGGAACTCCAAGAGGTAAGAAAGATGCGGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTGGAATTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCTAACCTTGCCACAATACCACAAGGAAGAAATGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCTGCTCTTCTACATCTTTGCTTGCACAGTAGTCGATATTTAAGCATGGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGGTCTCCTTAACCAATTCAGAAGTCAGAGACATGGTAATGCTGGGAGAGGCTGA 3249 0.4509 MENQSASMEFLLLEEVQFLGVKDDALSQWELVNVLDREEVGGDENCDDGDSSVQVGFNPWDSLELLNVTPTDGSIVCEGINYRLLHPDMEMKEDRDVDDDGIGDRRFDDVNHGHQFIDDDADHYGDDDNDDDGDGDDDDGYGLDDELVPWSVSSKVGRQRMRKLGKRSFSKMHNSKRSPYLFVRPGRKPNLKISSSSQLRHSQCDRRPVRALLPSAHPLTISPAAVSICSRQRPPSTVAVSVAVCSGSMEISLLKVLVNGISSFFHLSFSGNMNSELVSEYYQKAEQTLKLLKPIVDAFVNSELASDEVLNKSFEEVGQAVDELRELFGNWHPLSSKVYFVMQVESLISRIQTSGLNIFQQLKTSQLPVPDELNTMHLEHCVQKLKLLGHEEETTIVIKEAISEQVEGVGPSSKVLVDIAETLGLRSNQEILIEAVALEKLKENAEQAEKTAEAEYIDQMITIVTRMHEHLITIKQAQSSSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDPILSSNLNQASFLHGYMESGATRESPVFANSRSNQPSSPETARSRSFSSPGKSLTSGGIHREGTSPFHPRSTSEGSLSGIANGQCLDIARLSPTGSDDRSGSSDERSEDSAVQPSISQSITESSNALSPEKSQSHARSASESSGLSNVQGTHGDGNNTSQLSTTPGNSKETSVEANLDATDAASISASQKEPEILPRLVETRPRNQTIWRRPSERFAPRVVPAAGETRADLSGIEVQVRSLVEDLRSSSLDTQREATTKLRLLAKHNMDNRLVIASCGAINLLVDLLQSTDTMIQENAVTALLNLSINDNNKTAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKVRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPQGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSSRYLSMVLQEGAVPPLVALSQSGTPRAKEKAQGLLNQFRSQRHGNAGRG 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0183 1082 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 962 1003 IPR000225 GO:0005515
Bisa04g0183 1082 Pfam Armadillo/beta-catenin-like repeat 869 908 IPR000225 GO:0005515
Bisa04g0183 1082 Pfam Armadillo/beta-catenin-like repeat 830 867 IPR000225 GO:0005515
Bisa04g0183 1082 Pfam Armadillo/beta-catenin-like repeat 953 989 IPR000225 GO:0005515
Bisa04g0183 1082 Pfam Armadillo/beta-catenin-like repeat 912 949 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 828 868 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 1033 1073 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 991 1031 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 951 990 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 910 950 IPR000225 GO:0005515
Bisa04g0183 1082 SMART arm_5 869 909 IPR000225 GO:0005515
Bisa04g0183 1082 FunFam RING-type E3 ubiquitin transferase 783 1077 - -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 122 144 - -
Bisa04g0183 1082 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 839 881 IPR000225 GO:0005515
Bisa04g0183 1082 Pfam U-box domain 485 555 IPR003613 GO:0004842|GO:0016567
Bisa04g0183 1082 CDD RING-Ubox_PUB 486 538 IPR045210 -
Bisa04g0183 1082 Gene3D - 872 976 IPR011989 -
Bisa04g0183 1082 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 921 963 IPR000225 GO:0005515
Bisa04g0183 1082 SUPERFAMILY RING/U-box 474 561 - -
Bisa04g0183 1082 ProSiteProfiles U-box domain profile. 484 558 IPR003613 GO:0004842|GO:0016567
Bisa04g0183 1082 FunFam RING-type E3 ubiquitin transferase 484 559 - -
Bisa04g0183 1082 SMART Ubox_2 488 551 IPR003613 GO:0004842|GO:0016567
Bisa04g0183 1082 PANTHER U BOX DOMAIN-CONTAINING 280 1071 - -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 93 146 - -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 588 641 - -
Bisa04g0183 1082 Gene3D - 796 871 IPR011989 -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 588 735 - -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 668 735 - -
Bisa04g0183 1082 MobiDBLite consensus disorder prediction 93 121 - -
Bisa04g0183 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 560 IPR013083 -
Bisa04g0183 1082 Coils Coil 428 458 - -
Bisa04g0183 1082 Gene3D - 977 1078 IPR011989 -
Bisa04g0183 1082 SUPERFAMILY ARM repeat 799 1071 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0183 Bisa-ChrBisa04 3131194 3141669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0183 445 1082 U-box Gene Family AT2G23140 62.578 0.0 724