Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0172 ATGAAGCAACGCGCTTCTGGGGACACGAGGCGGTGGCTCTGGCTCCATCCTCCAAAGGCCACGAATCCGAATCCCAAAAGAGTCCGAGACTTTTTCGCCCACGAAACGCCTTTCGTTTCAGTGCTTCAATCTACGAAATTCTCGTGCGCCTTTCTCTTGTTCGACTTTTTAACAGAAATGGAGGTTGTGGTTGCAAAAGCGTTCAAATCGAGTTTGCATAGTGAATTTGCGTGTCAGCAAGGTGGTTATGGCGAGGAAATTTGGTGCTTGAATTCGAATAACGTCGTCGCCGGTGAGGATTTTTCCGTCGATGACCTCTTCGATTTCTCTCAGGGTGAATTCCAACATGAATATGGCGTTGAAGTGGTAGAAGAGGAAGAAGACGAGGAAAAAGACAGTCTCTCCGGTTCCTCCTCGCAGGACCGGAGCGAAGAAGACACCAACTCCAATTCCTCCTCCGGCGCCGGCGATTCGGAGTTCGTTTTTTCCAGCGAACTCGCCGTTCCGGACGATGAATTGGCGGACTTGGAATGGGTTTCTCACTTCGTCGACGATTCTCTCTCGGAGCTCTCTCTGTTGTACCCAGTCCGTTCAGAGCAAACGAAGACCCGGTCTGAACCGGAGCCCAGACCGGGGTTTGCGAAAACTCCTTGTTTTCCGTTTGAATTTCCCGTCAAGGCAAGAAACACAAAGCGTAGAAAAGCCAACGGTCTGGCCTGGTCGTTAAGCCCCTTGCTTTCCCGGCCATCCTCGCCGCCGTCCTCTTCTTCATCGTCGTTTTCCTCGACGTTGACTCTTTTCTCCTCCGGCGCCGTTCCGAAGACCGTCTTTCTCTACGGCGTCGGTGAGCCGCCGGCGGCGAAGAAGCAGAAGAAAAAGACGGATGCCCATGCCGGTGGGTCCCAGATTCAGCGTCGGTGCAGCCATTGCCAGGTGCAGAAAACTCCTCAGTGGAGAACCGGTCCACTGGGTCCCAAAACGTTATGTAACGCATGTGGCGTCCGGTTCAAGTCCGGTCGGCTTTTTCCTGAGTATAGACCGGCTTGTAGCCCAACGTTCTCAAGCGATGTTCACTCAAACAGCCATCGTAAGGTGATAGAGATGAGGAAGAGGAAGGAGATGAGCGAACCGTCTTCCGAAGCCGGTTCGACCGATTCACAAACGGATCTGAGTTGCGGAACTGAACTTCTAGATTATGGAGTGGATTTTGTCCCTTCTACATGA 1224 0.5253 MKQRASGDTRRWLWLHPPKATNPNPKRVRDFFAHETPFVSVLQSTKFSCAFLLFDFLTEMEVVVAKAFKSSLHSEFACQQGGYGEEIWCLNSNNVVAGEDFSVDDLFDFSQGEFQHEYGVEVVEEEEDEEKDSLSGSSSQDRSEEDTNSNSSSGAGDSEFVFSSELAVPDDELADLEWVSHFVDDSLSELSLLYPVRSEQTKTRSEPEPRPGFAKTPCFPFEFPVKARNTKRRKANGLAWSLSPLLSRPSSPPSSSSSSFSSTLTLFSSGAVPKTVFLYGVGEPPAAKKQKKKTDAHAGGSQIQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSDVHSNSHRKVIEMRKRKEMSEPSSEAGSTDSQTDLSCGTELLDYGVDFVPST 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0172 407 ProSiteProfiles GATA-type zinc finger domain profile. 301 337 IPR000679 GO:0006355|GO:0043565
Bisa04g0172 407 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 303 364 - -
Bisa04g0172 407 ProSitePatterns GATA-type zinc finger domain. 307 332 IPR000679 GO:0006355|GO:0043565
Bisa04g0172 407 MobiDBLite consensus disorder prediction 122 158 - -
Bisa04g0172 407 Pfam GATA zinc finger 307 340 IPR000679 GO:0006355|GO:0043565
Bisa04g0172 407 Gene3D - 299 375 IPR013088 GO:0006355|GO:0008270
Bisa04g0172 407 SMART GATA_3 301 355 IPR000679 GO:0006355|GO:0043565
Bisa04g0172 407 FunFam GATA transcription factor 297 382 - -
Bisa04g0172 407 MobiDBLite consensus disorder prediction 140 158 - -
Bisa04g0172 407 CDD ZnF_GATA 306 354 IPR000679 GO:0006355|GO:0043565
Bisa04g0172 407 PANTHER GATA TRANSCRIPTION FACTOR 87 378 - -
Bisa04g0172 407 MobiDBLite consensus disorder prediction 369 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0172 Bisa-ChrBisa04 2869198 2871940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0172 67 373 C2C2-Gata Transcription Factor Family AT5G66320 41.945 2.59e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa04g0172 GATA 5e-16 CL0167