Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0169 ATGACAAACCCTCCAGAGGAGCCTCCCTCGCCCTCGCGGTGCATCACGCCGCTGCTGCCGCCTGCCGACGTCGACTGCACGCCATCCGAACGGCAAGCTGACGCCGATGAGGCGAAGACCCTTCTCCACTTTGACGTGGCCGAAGAGAAGCCTTCTTCTCCAATTTCCGTTCCATCTGTTCCCAGGGAAGTGTCAAATGACACCAATGTAGCTGACATTGCTATGGAGACCAAGAAGGTGGAAGAGAAGGCAAATGAGGTTGCCAAGTCAGATGAGAATGAAGAGGCAGCGAAAATAGTAGTGGGAACCGAGGCAGCAGATGCTTATGTGGCTTGCACTCTTGGTGAGACAACTGAAACAGTGGAGACCAGGAAGGTGGAAGAGAATATCAGTGTAGCTGAAACTGCTGAAAATGTAACTTACATTGCTGAAGAGACCAGGCAGGTAGAAGAGGAGGCAACTGGGGCTGCCGTGTCATATGAGAATGAAGAAGCAGAGAAAATGATGGCAGGGACGGATATGGCAGATGGGTATGTGGCTTGTTCCCTGGGTGAGACAACTGCAGCAGTGGAGACCAGGAAGCTGGAAGAGGAAGTAGATGAGGGTGCCATGTCATATGAGAATGAGGATGCAGAGAAAATAGTAGCAGGGATGGAGACAGCAGATGGGTATGTGGCTTGTTCCCTTGGTGAGACAACTGAAGCAGTGGAGACCAGGAAAGTGGAAGAGGAGGCAGATGAGGATACCAGGTCAGATGAGAATGAGGAAGCTGAGAAAATAGTAGTGGGGATGGAGATGGAAGATGCATATGTGGCTCACACCCTTGGTGAGCCAACTGAAGCAGACGGAGTTGATGAAATCAAGGAGGCTGAAGATAAGGAGGAGGTGGCAGAGGAGTTGAATGGGGTTGCTATGGTGGAAGGTGCAACTGACACAGAAGAGGATGTAGATGGTGCTGGTGCGGAGGAAGAGGCCCTAGATGCAGAGGGGATGGAAGTAGCAAACGAAGCAGATTTGTTGGAAGAGGAAGTAAATGTTGCTGACATGGCAGAATATACAGAGGCTGCAGATGTGGCAGAGGAGCAAAGTAGAAGTCTCAGTGGTGGAAAGAGGAAGCGTGGGAGAAATTCAAAGTCTACAGGGAGAGTTCCAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATTTGCTTCGACGGGGGTGAGCTTGTGCTCTGCGACCGCAGGGGATGTCCAAAGGCTTACCATCCCACATGTGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAAGAGTGCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTCATCTTATGTGTTAGGGGAAAGAAAGGCTTTTGTGAGACATGCATGAAGACTGTAATGTTGATTGAACAGAATGAGCTGGGAAACAAGGACACGGGACAAGTGGATTTTGATGACAAAAACTGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCGCTAACGTATGATGAGCTCATCCAAGCTAGAAACCCGTGGAAGGGATCTGATATGCTTCCTGCTAGACAGGAATCACCTGATGAACTTTATGATGCTAATAATGATATAGGATCACATTCAGATAGCTCTTCTGAGAATGTAGAAATGAGTAGCGCTAGAAAAAGAAAGGCCAAGAAACGGGTGAAGTCCCGTTCCAAGGAAGGGAATTCACATAGCACAATTACATCAATTGGTGCCAAAGGGCTGTCTGCAGATGACAGGTCTGAGTGGGCATCGAAAGAGCTTTTGGAGTTTGTTATGCACATGCGAAATGGTGATAAATCTGTTGTGTCTCAGTTTGATGTGCAGGCTCTTCTACTAGAGTATATTAAAAGAAACAAGCTTCGAGATCCTCGCCGTAAAAGTCAAATAATTTGTGATGTGAGGCTTCAAAATTTGTTTGGCAAACCAAGAGTGGGCCATTTTGAAATGTTGAAGCTTCTTGAATCCCATTTCCTTTTAAAAGAAGATTCCCAGGCTGAAGATCAGCAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGCGATGGCTATACTGATTCCTATATGAAGGCTGGAAAAGATAAGAAACGTAAAACACGTAAAAAGGGTGATGACAGAGGGCTTCAATCTAATCCTGATGATTATGCAGCTATTGATAATCATAATATTAATTTAATTTATTTAAGACGTAATTTGGTCGAAGATCTTCTTGAAGATGCAGATAAATTTCATGATAAAGCTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAAGTTGTAGGTACATGCAAAGCAGCTGAACCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATTTTAAATTTAAACAAGACAGAGATCGTATCTATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGCCTCCGCCAGAGCATAAAGTGTGGACTGATAAATCGGCTGACAGTGGGTGACATTCAGGAGAAAGCAATGATACTGCAAGCAGTCAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGAGGCTAAGTCATCTCCGTGATAGAGCTAAATGTGTGGAGAAATTGCAGCTTTTAAAAACGCCTGAGGAACGTCAGCGTAGATTGGAAGAAATTCCAGAAATACATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGACGAAGATGAAATGGATAATAAAAGATTAGAAAACTACATGGGACCTAGAGGAACTGCATTTGATCGAAGGGGGAGAGAAATGGTTTCTCCTAGAACAGGGGGTTCTATTTCAAATGATTCTTGGAGTGGAGCAAGGAACTATCCTAATATAAATCGGGAACTAAGCAGGAATTTGTCCCATAAGGGATTTTCAATTAAATCTGATGATGTTTCTAATGCTAATGAGGGATTGAATGATCTTCAAATGGTCCATGGAAGAGATAGGGAAACACAACTATCTAACAGCTGGGAGGCTCAAAAGCTTTATTCGAGCATAGAAATTAGTGCTAAACATACCCATCCTGTGGCAGCATCTGAGTCTTTTTCTACTACTGTGTCAGAAGCTTCTGCAGTACCATCTTCTACTGGCATAGCACCACCAGCTGTGAAAATTAATGAAACAGAAAAGATGTGGCATTACAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGTTACGGAAATGGAGCAACACTGGATATTTTCCTGCTGATTTGAAAATTTGGAGAACCACTGAGAGACAAGAGGAGTCTATACTCTTAACAGATGCCTTAGCTGGAAACTTCTCTAAGGAGCCATCAATGGTGGATAAAACTTTCCCCAAGGCTCAAATGGTGCATAATTTGCATTACACTTCCTCACAGTCTGGGAAGCTTCCTTTGCCCACACAAGGTATAGAAGGTCAAGTTGGAGGAAGACCAACATTTGATCATAGTAGTGGGTCTTTTAATTCACGTGGTGCAGTGGGTTCTCTAGGACAAGCTGCAGGAGGAAGCTGGAGGTCTGAAGAAAATGATTCTACAGCAAGTAGGCCTTCTCCGATGACAGTTGAAGTCCCTAGGATTCCTGCAAATGGGCGGGGTTATGATGCTGGTGCTAGAATTGAAACAACAAATCTTCCTTCACCTACTCCTCAGACTACCCCTTATGGGCCAAAGGGGCAGGCTTTTGAAACTAAATGGTCGCCGACTCCTGCCCAGTCAGCTGGCTCTTTTGCAGGAAGTCCTTTTCCAGGAGGTCATGTCCCTGTGGTCCCAGAGAATGTGGTGCAAAATACTGAAAGTAAGATATCAGCTCCTAAACCTTTGAGCTCGACGGGTATTCCTCTGGGGCATCCTCAAGCAACAACAGTGGCACCTACTCTGGCTGATGCCTCAAGAAATACAGGTGTTGACAGTAAAACTGCAAGCATGCAAAATGTGGTCATGGGTGGCCATAATTCTCATGCTGAAGCTCAAGGATGGGGATCTGGTATGGTTCGGAAACCTGAAATGGGTGGCTCAATTCAGTTACAAGGGGGTGAACCACAGACGTGGGGAGGCGTTCATCCAAGGGTGGAATCAAATAATCCTGCTCCTGTGCCTGCCCAACCACCTACCCACGGCCACTGGGGTGATGCTTCATCTGTCCAGAATACTGCTCCATTTAACACTGGGAATCCAATGGGGAATTTCCCCATGCCAGGCATTCAAGATTTGAGACCACCAACTTCAAGTAATCAACCTAACATTACAGCTCAACAGCCACCCAATATGCCTTGGGGCATGATGGTTGCAGAAAATCAAAATACTAGCTGGGGAGCAATGCCGGGAAATCCAAATATGAATTGGGGTGGGCCTTTACCTTCCAATATGAACGTAAATTGGATGTCTGGGCAGGGGCCACCAGCGGGAAATGCAAATCCAGGATGGGCTGCTCCTAATCAGGGGCCATCTCCAGTAAATGCAGCGGGTTGGGTTGCACCTGGTCAGGGGCATCCTAATGCTAATGCAGGTTGGGTTGTGCCCGGTCAAGGGCCGGCTCCTTCTGGTGCTAATCCTGCTTGGGCTGCACCAGCGGGGAATCAAGGTATGTGGGGAAATGAACCAAACCACAGGGATCGAGGTCCCCATGGTGGAGATTCTGGTTATGGCGGAGATAAACTGTGGAACAGGCAGTCTTCATTTGGTGGTGGCGGCCGAGGAGGAGGTCCTTCGGGGCCCTCTTTTGGAGGGCAGAGAGGAGTGTGCAAGTTCCATGAGAGTGGACACTGCAAGAAGGGAGCCTTTTGTGATTATTTGCACACCTGA 4944 0.4595 MTNPPEEPPSPSRCITPLLPPADVDCTPSERQADADEAKTLLHFDVAEEKPSSPISVPSVPREVSNDTNVADIAMETKKVEEKANEVAKSDENEEAAKIVVGTEAADAYVACTLGETTETVETRKVEENISVAETAENVTYIAEETRQVEEEATGAAVSYENEEAEKMMAGTDMADGYVACSLGETTAAVETRKLEEEVDEGAMSYENEDAEKIVAGMETADGYVACSLGETTEAVETRKVEEEADEDTRSDENEEAEKIVVGMEMEDAYVAHTLGEPTEADGVDEIKEAEDKEEVAEELNGVAMVEGATDTEEDVDGAGAEEEALDAEGMEVANEADLLEEEVNVADMAEYTEAADVAEEQSRSLSGGKRKRGRNSKSTGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCEKSAYYMCYTCTFSLCKGCIKDAVILCVRGKKGFCETCMKTVMLIEQNELGNKDTGQVDFDDKNCWEYLFKDYYIDLKEKLSLTYDELIQARNPWKGSDMLPARQESPDELYDANNDIGSHSDSSSENVEMSSARKRKAKKRVKSRSKEGNSHSTITSIGAKGLSADDRSEWASKELLEFVMHMRNGDKSVVSQFDVQALLLEYIKRNKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDQQGSVVDTEVNHLEGDGYTDSYMKAGKDKKRKTRKKGDDRGLQSNPDDYAAIDNHNINLIYLRRNLVEDLLEDADKFHDKAVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMILQAVRVKDWLETEIVRLSHLRDRAKCVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEDEDEMDNKRLENYMGPRGTAFDRRGREMVSPRTGGSISNDSWSGARNYPNINRELSRNLSHKGFSIKSDDVSNANEGLNDLQMVHGRDRETQLSNSWEAQKLYSSIEISAKHTHPVAASESFSTTVSEASAVPSSTGIAPPAVKINETEKMWHYKDPSGKVQGPFSMVQLRKWSNTGYFPADLKIWRTTERQEESILLTDALAGNFSKEPSMVDKTFPKAQMVHNLHYTSSQSGKLPLPTQGIEGQVGGRPTFDHSSGSFNSRGAVGSLGQAAGGSWRSEENDSTASRPSPMTVEVPRIPANGRGYDAGARIETTNLPSPTPQTTPYGPKGQAFETKWSPTPAQSAGSFAGSPFPGGHVPVVPENVVQNTESKISAPKPLSSTGIPLGHPQATTVAPTLADASRNTGVDSKTASMQNVVMGGHNSHAEAQGWGSGMVRKPEMGGSIQLQGGEPQTWGGVHPRVESNNPAPVPAQPPTHGHWGDASSVQNTAPFNTGNPMGNFPMPGIQDLRPPTSSNQPNITAQQPPNMPWGMMVAENQNTSWGAMPGNPNMNWGGPLPSNMNVNWMSGQGPPAGNANPGWAAPNQGPSPVNAAGWVAPGQGHPNANAGWVVPGQGPAPSGANPAWAAPAGNQGMWGNEPNHRDRGPHGGDSGYGGDKLWNRQSSFGGGGRGGGPSGPSFGGQRGVCKFHESGHCKKGAFCDYLHT 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0169 1647 Gene3D - 753 881 IPR036128 GO:0003677
Bisa04g0169 1647 ProSiteProfiles GYF domain profile. 1090 1144 IPR003169 GO:0005515
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 552 605 - -
Bisa04g0169 1647 FunFam Zinc finger CCCH domain-containing protein 19 752 881 - -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1216 1232 - -
Bisa04g0169 1647 CDD Bbox1 439 465 - -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1573 1618 - -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 355 383 - -
Bisa04g0169 1647 Pfam Plus-3 domain 756 859 IPR004343 GO:0003677
Bisa04g0169 1647 FunFam Zinc finger CCCH domain-containing protein 19 602 697 - -
Bisa04g0169 1647 SMART gyf_5 1091 1146 IPR003169 GO:0005515
Bisa04g0169 1647 FunFam Zinc finger CCCH domain-containing protein 19 384 483 - -
Bisa04g0169 1647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 485 IPR013083 -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 235 255 - -
Bisa04g0169 1647 Pfam GYF domain 1093 1133 IPR003169 GO:0005515
Bisa04g0169 1647 SUPERFAMILY FYVE/PHD zinc finger 390 443 IPR011011 -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1416 1469 - -
Bisa04g0169 1647 FunFam Zinc finger CCCH domain-containing protein 19 1092 1149 - -
Bisa04g0169 1647 SUPERFAMILY Plus3-like 752 880 IPR036128 GO:0003677
Bisa04g0169 1647 CDD GYF 1090 1145 IPR003169 GO:0005515
Bisa04g0169 1647 SMART PHD_3 393 439 IPR001965 -
Bisa04g0169 1647 SUPERFAMILY SWIB/MDM2 domain 615 691 IPR036885 -
Bisa04g0169 1647 CDD PHD5_NSD 393 438 - -
Bisa04g0169 1647 ProSitePatterns Zinc finger PHD-type signature. 394 454 IPR019786 -
Bisa04g0169 1647 ProSiteProfiles Zinc finger C3H1-type profile. 1622 1647 IPR000571 GO:0046872
Bisa04g0169 1647 ProSiteProfiles Plus3 domain profile. 751 884 IPR004343 GO:0003677
Bisa04g0169 1647 SMART rtf1 751 861 IPR004343 GO:0003677
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1451 1468 - -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1171 1243 - -
Bisa04g0169 1647 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 295 1647 - -
Bisa04g0169 1647 ProSiteProfiles SWIB/MDM2 domain profile. 609 692 IPR003121 -
Bisa04g0169 1647 SMART swib_2 617 695 IPR019835 -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1422 1438 - -
Bisa04g0169 1647 CDD SWIB-MDM2_like 615 690 - -
Bisa04g0169 1647 SUPERFAMILY GYF domain 1081 1143 IPR035445 -
Bisa04g0169 1647 ProSiteProfiles Zinc finger PHD-type profile. 391 457 IPR019787 -
Bisa04g0169 1647 Gene3D SWIB/MDM2 domain 605 700 IPR036885 -
Bisa04g0169 1647 Pfam SWIB/MDM2 domain 617 690 IPR003121 -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 1193 1207 - -
Bisa04g0169 1647 Gene3D - 1091 1150 IPR035445 -
Bisa04g0169 1647 MobiDBLite consensus disorder prediction 716 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0169 Bisa-ChrBisa04 2815137 2824897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0169 391 464 PHD Transcription Factor Family AT4G14920 36.486 3.18e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bisa04g0169 Plus-3 5.1e-23 No_clan