Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0093 ATGGGCGAGAGGGTCACTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGCTTCGGCTTCATAACTCCTGATGATGGCGGCGAGGATCTCTTCGTGCATCAGTCTTCGATCCGATCCGAAGGGTTTCGAAGTCTAGGCGATGGAGAGACCGTTGAGTTTCAGATCGAATCCGATCCCGATGGCCGCACCAAGGCTGTTGACGTCACCGGCCCCGACGGGGCTGATGTTCAGGGTAGCCGACGCGGCGGCGGTGGCGGCGGCGGCGGTGGAGGCAATAGATCTTACGGTGGCGGTGGCGGCCGAGGTGGTGGGTACGGCGGAGGCTATGGAGGTGGTGGCGGTTATGGTGGTAGTCGTGGCGGAAGAGGCGGTGGTGGTTATGGCGGTGGAGGTTATGGAGGTGGAGGTTATGGTGGTGGAGGCGGTGGTGGGGGCTGCTTTAAGTGTGGAGAGATGGGTCACATGGCCAGGGACTGCACCCAGGGAGGCGGTGGCGGTGGAGGAAGGTACGGCGGCGGCGGAGGAGGAGGCGGCGGGAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCCCCACCACCGCTCGTTGA 600 0.63 MGERVTGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSEGFRSLGDGETVEFQIESDPDGRTKAVDVTGPDGADVQGSRRGGGGGGGGGGNRSYGGGGGRGGGYGGGYGGGGGYGGSRGGRGGGGYGGGGYGGGGYGGGGGGGGCFKCGEMGHMARDCTQGGGGGGGRYGGGGGGGGGSCYNCGESGHFARDCPTTAR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0093 199 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Bisa04g0093 199 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Bisa04g0093 199 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Bisa04g0093 199 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Bisa04g0093 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 195 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Bisa04g0093 199 Gene3D - 142 169 - -
Bisa04g0093 199 Gene3D - 176 199 - -
Bisa04g0093 199 MobiDBLite consensus disorder prediction 56 94 - -
Bisa04g0093 199 Gene3D - 2 82 IPR012340 -
Bisa04g0093 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Bisa04g0093 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 114 196 - -
Bisa04g0093 199 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Bisa04g0093 199 FunFam Cold shock protein 1 1 69 - -
Bisa04g0093 199 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Bisa04g0093 199 SUPERFAMILY Retrovirus zinc finger-like domains 135 197 IPR036875 GO:0003676|GO:0008270
Bisa04g0093 199 ProSiteProfiles Zinc finger CCHC-type profile. 146 161 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 Pfam Zinc knuckle 145 161 IPR001878 GO:0003676|GO:0008270
Bisa04g0093 199 SMART csp_8 6 71 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0093 Bisa-ChrBisa04 1425534 1426133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bisa04g0093 CSD 2.2e-26 CL0021