Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0059 ATGTCTGAAAGGCATCATAGTGATCTGGATGAAAGAGATAGAGAGAGGAGTCGTGACAGGGACTATAGAGTCAGAGAAAGAAGCCGGGACAAGGATTTTAGAGAAAGGGAGAGGGAACCCAGGGAGCGAGATAGAGATAGCAGACGTCATAAAGAGAAGAAGGAAGAAGCAGCAGAACCTGAGGCTGATCCTGAACGGGATCAGAGGACTGTTTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGGGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATTCCAGACGATCTAAGGGTGTTGGGTATATTGAATTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCTGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACTACATCTGTATCTACTGGATCCACTGGAGCTATTGGTCCTTATACTGGCGGAGCAAGAAGGCTCTATGTTGGCAATCTGCATTTCAGTATTACTGAAGCTGATCTTCGTGGGGTCTTTGAAGCATTTGGTGTGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAGATGGGCAACTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAAACTGGAATGCAAGAACTTGGAGGAAATACTGGTGATTTCGATGATGACGATGGTGGCAGCTTGTCCCTAAATGCATGTTCTCGAGCCCTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAGGTCTTACTGGTTCCATTGGTGGTAATTCTGTTGCCAACAACACAGGCCTTAACCTACCAGCAGCAGCACTTCTGGGAGCTGGGCCCGTGGATTCTCCCCTTGCTTCTGTTCCTTCAGTGGCTGGACTGCCAGGTGTAGGTCTCCAATTTCCCACAGCAACTGCTGCAATTCCTACTATTGATACAATTGGTGTTCCAAGTGAATGCTTGCTGTTAAAGAATATGTTTGATCCAAAAGAAGAGAAGGAACTGGACTTTGATTTGGATATTAAGGAAGATGTTGAAGCAGAGTGCTCTAAGTTTGGAAAGTTAAAACATATATATGTTGACAAGAATACTGCTGGTTTTGTCTACTTGAGATTTGAAAATACTCAATCTGCGACAAATGCACAGCAGTCTCTGCATGGGAGATGGTTTGCTGGGAAGATGATTACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGATAAATTCCCAGACAGCAGATAG 1368 0.4554 MSERHHSDLDERDRERSRDRDYRVRERSRDKDFREREREPRERDRDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVSTGSTGAIGPYTGGARRLYVGNLHFSITEADLRGVFEAFGVVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLDGQLEIGGRTIKVSAVTDQTGMQELGGNTGDFDDDDGGSLSLNACSRALLMQKLDRSGTASGLTGSIGGNSVANNTGLNLPAAALLGAGPVDSPLASVPSVAGLPGVGLQFPTATAAIPTIDTIGVPSECLLLKNMFDPKEEKELDFDLDIKEDVEAECSKFGKLKHIYVDKNTAGFVYLRFENTQSATNAQQSLHGRWFAGKMITASFMVPQSYEDKFPDSR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0059 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Bisa04g0059 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 250 IPR000504 GO:0003723
Bisa04g0059 455 Gene3D - 356 455 IPR012677 -
Bisa04g0059 455 SUPERFAMILY RNA-binding domain, RBD 173 448 IPR035979 GO:0003676
Bisa04g0059 455 SMART rrm2_1 362 440 IPR003954 GO:0003676
Bisa04g0059 455 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 264 379 IPR029123 -
Bisa04g0059 455 CDD RRM3_RBM39_like 360 442 - -
Bisa04g0059 455 FunFam CC1-like, splicing factor 168 276 - -
Bisa04g0059 455 CDD RRM1_RBM39_like 70 142 - -
Bisa04g0059 455 FunFam Splicing factor, CC1-like protein 356 455 - -
Bisa04g0059 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 444 IPR000504 GO:0003723
Bisa04g0059 455 MobiDBLite consensus disorder prediction 1 68 - -
Bisa04g0059 455 NCBIfam splicing factor, CC1-like family 7 453 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bisa04g0059 455 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 8 454 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bisa04g0059 455 FunFam Splicing factor CC1-like 1 154 - -
Bisa04g0059 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 437 IPR000504 GO:0003723
Bisa04g0059 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 244 IPR000504 GO:0003723
Bisa04g0059 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 138 IPR000504 GO:0003723
Bisa04g0059 455 SMART rrm1_1 70 142 IPR000504 GO:0003723
Bisa04g0059 455 SMART rrm1_1 362 440 IPR000504 GO:0003723
Bisa04g0059 455 SMART rrm1_1 174 246 IPR000504 GO:0003723
Bisa04g0059 455 SUPERFAMILY RNA-binding domain, RBD 14 144 IPR035979 GO:0003676
Bisa04g0059 455 Gene3D - 2 156 IPR012677 -
Bisa04g0059 455 Gene3D - 158 255 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0059 Bisa-ChrBisa04 927235 940559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0059 70 236 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 1.10e-13 71.2