Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0033 ATGGCTTTCTTCCTCTGCTTTATTTCCTTTCTTGTTTCATCTGTTACTGCTTGCGATCGCTGCGTCCACCAAACCAGGGCTGCCTTTTTCTCCACAGACTCTGCTCTCTCTTCTGGGTCATGTGGATATGGATCCTTGGCGTTGGAACTAGGTGATGGACACCTTGCTGCTGGGGTGCCTTCACTGTACAAAAATGGAGCAGGTTGTGGTGCGTGCTTTCAGATAAGATGCAAGAACCCAAGTGTGTGTACCAAATCAGGTAGCAGAGTGGTTTTGACTGATCTCAATAACCATAATGAAACTGATTTTGTGCTCAGCAGCAGTGCCTTCATGGCCATGGCTCAAAAGGGTATGGGCCAACAACTTCTGAAGCTTGGAATTGTTGACGTTGAATATAAGAGAGTACCATGTGAGTATAAAAATAAGAATTTGGCTGTGCGGGTGGAAGAATCAAGCAAGAATCCAGATTACTTGGCGATTAAATTTTTGTATGAAGGTGGTCAAACAGAGATAGTAAGCGTTGATGTTGCCAGGGTTGGATCGTCAAACTGGAGTTTCATGAGCAGAAACTATGGGGCAGTGTGGGACACAAGTAGGGTTCCAAGAGGTGCTTTGCAAATGAGGATAGTGGTGACATCAGGGTATGATGGAAAGTGGATTTGGGCAAAGAAGGTGTTACCCGCAGATTGGAAGGGTGGGGTTCTCTATGACAGTGGTGTTCAGATAAGTGATATTGCACAGGAGGCCTGTTCTCGCTGTGATGACGCTGCTTGGCCAATCTCATTATTGAAAGCTTAA 798 0.4561 MAFFLCFISFLVSSVTACDRCVHQTRAAFFSTDSALSSGSCGYGSLALELGDGHLAAGVPSLYKNGAGCGACFQIRCKNPSVCTKSGSRVVLTDLNNHNETDFVLSSSAFMAMAQKGMGQQLLKLGIVDVEYKRVPCEYKNKNLAVRVEESSKNPDYLAIKFLYEGGQTEIVSVDVARVGSSNWSFMSRNYGAVWDTSRVPRGALQMRIVVTSGYDGKWIWAKKVLPADWKGGVLYDSGVQISDIAQEACSRCDDAAWPISLLKA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0033 265 Pfam Lytic transglycolase 56 132 IPR009009 -
Bisa04g0033 265 CDD DPBB_EXLA_N 13 139 - -
Bisa04g0033 265 SUPERFAMILY Barwin-like endoglucanases 6 141 IPR036908 -
Bisa04g0033 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Bisa04g0033 265 PANTHER EXPANSIN-B3 12 241 - -
Bisa04g0033 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Bisa04g0033 265 SMART dpbb_1 56 132 IPR007112 -
Bisa04g0033 265 Gene3D - 10 138 IPR036908 -
Bisa04g0033 265 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Bisa04g0033 265 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Bisa04g0033 265 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Bisa04g0033 265 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Bisa04g0033 265 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Bisa04g0033 265 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Bisa04g0033 265 Gene3D - 139 242 IPR036749 -
Bisa04g0033 265 Pfam Expansin C-terminal domain 145 227 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0033 Bisa-ChrBisa04 672949 674421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0033 17 258 Expansin Gene Family AT4G38400 62.705 9.85e-109 313