Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0017 ATGGCAAACTCTGATTCCGACTGTGGTTGGAGCAGTGCTCAGAAGCCGAAGCACTGTCGAAAGAAGCGAAAGGCCAAATTGATGGCCATCGTGGACAATGGCATTGGATTGAAGCCGAAGGATGGGAAGAAACCCGAGGCAGGTGCAGCGAAGATCACCCTGCCATGTAGCGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCTCTGTTTGGGCACATGCGTTGCCATCCTGAACGTGGATGGCGGGGGATCAATCCACCCCCGAATTTGAGGCGACAGAATGATATGACGGAAGAGGAGCATGAGGTGGCGGACTGTCTGATGTTGCTCGCCAGTGGAACTCATGAAAAAGAGGAGGCCGGTCCCTCTGGTTCCAACACCCGCTTCGAGTGCTCCAGTTGCAACGGGGTTTTCGGGCACAGGGAGAGTCATAAGAACGTGAAGGGTTGTTTTGGCATAACCAGGAGCGGCGGAGATTGGGAGGAGAACAATATTCATGATGACGACGACGACGACGAGATGGTGTCAGGATTAGGAGGGCACAAGTGCAGCATATGCCGGAGGGTGTTCTCGAGTGGTCAAGCACTGGCTGGGCACAAGAGGTGTCACTGGGACAAAGGAGACAATGACCCCTCTTCCATCTCCACTCCACCAAAGCCAGCAGGTGGCTGTGGTGTCGACTTAAATTTGCCTCCCCCTCTTCCTCTTCCTCTTCCACACCATTCCGCCCTCACTCTGGATTTGAGGTTGGGACTCTAA 759 0.5441 MANSDSDCGWSSAQKPKHCRKKRKAKLMAIVDNGIGLKPKDGKKPEAGAAKITLPCSECGKKFWSWKALFGHMRCHPERGWRGINPPPNLRRQNDMTEEEHEVADCLMLLASGTHEKEEAGPSGSNTRFECSSCNGVFGHRESHKNVKGCFGITRSGGDWEENNIHDDDDDDEMVSGLGGHKCSICRRVFSSGQALAGHKRCHWDKGDNDPSSISTPPKPAGGCGVDLNLPPPLPLPLPHHSALTLDLRLGL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0017 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Bisa04g0017 252 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Bisa04g0017 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 203 IPR013087 -
Bisa04g0017 252 SUPERFAMILY beta-beta-alpha zinc fingers 55 203 IPR036236 -
Bisa04g0017 252 SMART c2h2final6 181 203 IPR013087 -
Bisa04g0017 252 SMART c2h2final6 54 76 IPR013087 -
Bisa04g0017 252 MobiDBLite consensus disorder prediction 1 23 - -
Bisa04g0017 252 Pfam C2H2-type zinc finger 181 206 - -
Bisa04g0017 252 Pfam C2H2-type zinc finger 56 78 - -
Bisa04g0017 252 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Bisa04g0017 252 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 38 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0017 Bisa-ChrBisa04 555862 556620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0017 43 252 C2H2 Transcription Factor Family AT4G35280 48.729 4.69e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa04g0017 zf-C2H2_6 3e-10 CL0361