Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0005 ATGAGTTCAGGATTCAGCATAATTATTATACATCTGTTATGGCTTGCGTCAACACTGACTCTCACGCATGGAGCATCAAAGGAAGTAACTTTAGAACCCGATGTTGTGAAAATTGGAGCTATTTTCACATTTAAAACTATAAATGGACGAGTTTCCAAAATTGCCATCAAAGCTGCCGAGAAAGATGTAAATTCCGATCCTCGTATCCTTGGTGGGCGCAAATTGTCCATAACCATGCACGATTCCAACTTCAGCGGTTTTCTCGGCTTCATTGGGGCGCTCAAGCTCTTGGAGGGGGACACAGTAGCTATTATTGGTCCACAACATGCAGTAATGGCGCATTTACTTTCACATCTTGCAAATGAACTCCATGTTCCTCTATTGTCGTTCACAGCTCTAGATGCCACCCTGTCACCTCTACAGTACCCTTATTTTGTGCAAACAGCTCCCAATGATCGATTCCAGATGACCGCAATTGCAGATATGATTAGCTATTTTGGTTGGAGAGAGATTATTGTTGTGTTCAGTGATGATGACCCGAGTCGAAATGGTGTAACTGTACTCGGAGATAAACTTGCAGAAAAAAGGTGTAGGATATCATACAAAGCAATTCTTCCCTCTGATCTAACTGCTACTCCAAGTGATATCACTGCTCAGTTGAGCAAGGTTAAATGCATGGAGGCTCGAGTGATTGTTCTAAACACTTACTCCAAACCAGGTCTCTTGGTTTTAGATATAGCCCAGAAACTAGGGATGATGGGTGAAGGGTATGTATGGATAGCTACTAATTGGTTATCAACAGTTTTAGACTCAACTTCATCTCTTCCAGTACATACTTCTTACTCGATCCAAGGAGTTATTACACTTCGCCATCACACTCCTCAATCAAAAAGAAAACAGGCTTTTATGTCAAGGTGGAAACAGATGAGTAATGGCTCAATTGGGCTGAATCCATATGGGCTCTATGCTTATGATTCTGTTTGGATCCTTGCTCATGCATTGAAATTATTTTTTGATCAGAATGGTACCATTTCCTTCTCTAATAATACAAAATTAAGCGGAATGAGAGGGGATACTCTGGATCTTGGTGCATTGAGCATTTTTAATGGAGGGAAACAGTTACTTGATAATATATTGCGGACCAACATGACTGGATTGACAGGACCTATTCAATTTGATTCAGATAGATCCCCTCTGCATCCATCATATGTAATCCTTAATGTAATAAATGGCGGTCTTAGGAAGATCGGGTACTGGTCCAATTATTCTGGGCTTTCTGTTATTAGTCCCGAGAAACTTCATACAAAGGCTGCCAACCGTTCAATTTCAAACCAGCATCTATCCCGTATAGTGTGGCCAGGCGGTACAACAGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTGAGAATAGGAGTTCCCAACCGAGTTAGTTATCGAAACATTGTCTCACAAATTAATGGTACCAATGCAGTTCAAGGATACTGCATAGATGTGTTCCTCGCTGCCATAAAATTGCTACCATATCCAGTTCCATATAGGTTCATTCTGTTTGGAGATGGACATAAGAACCCCAACTACTATGACCTTGTCAATATGATTACTTCTGATGTTTTTGATGCTGCTGTAGGTGACATTGCAATTGTCACTGACCGAATGAAGATTGTGGATTTTACTCAACCATATATAGGGTCAGGACTAGTTGTGGTTGCAAAAGTAAAAACATCGAAGTCAAGTGCTTGGGCTTTTTTGCGACCATTTACTCCGTTAATGTGGGGGGTCACAACTGTTTTTTTCCTCATAGTTGGAGCAGTTGTGTGGATTGTCGAACATAGAACAAATGATGAGTTCCGGGGGCCTCCTAAGAAACAAATTGTTACAATTCTTTGGTTTAGCCTCTCCACCATGTTCTTTGCACACAGAGAAAACACAGTTAGTGCACTAGGTCGTGTTGTACTAATCATCTGGCTTTTTGTGGTTCTGGTAATCAATTCAAGCTACACTGCAAGCCTAACATCAATTCTCACTTTGCAACAACTTTCCTCACCCATAACTGGAATTGATACCTTGATAGCCAGTAGTGAACCTATAGGATTTCCGGTAGGGTCATTTGCTGAAAACTATCTTGCTCAAGAACTCAACATTCCAAAATATCGACTTATTCCTCTTGGCTCGCCGGAAGAATATGCTATAGCTCTTGAGAGAGGAACTGTTGCTGCTGTTGTAGATGAACGACCATTTGTAGAACTCTTCATGTCCGACCACTGCAAATTCTCCATTAGAGGCCAAGAATTCACCAAAGGCGGATGGGGATTTGCATTCCCAAGGGACTCTCCTTTATCCATCGATATGTCAACTGCTATTCTGACTCTATCCGAGAATGGAGAACTCCAGAAGATTCATGAAAGGTGGCTATCAGAAAGTGCTTGTAAATTCCATAAAACTGAGAATGAATCTGAGCAACTTCAGTTAGAAAGCTTCTGGGGCCTATTTCTGATATGTGGGATAGCAAGTTTCCTGGCTCTTCTTGTCTATTTCATCTTGATGGTTCTCCGGTTCAGCCGAGACTTCCCTAGAAATGATGATCCTTCCAATGGCAGCCGCTTGCCCTCTGCTTGTATCCAAACATTTCTAAATTTTGTTGATGAAAAAGAAGACGTATCACAGAGAAAGCTTAAAAGAAAACGGTATATGTCATGA 2709 0.4131 MSSGFSIIIIHLLWLASTLTLTHGASKEVTLEPDVVKIGAIFTFKTINGRVSKIAIKAAEKDVNSDPRILGGRKLSITMHDSNFSGFLGFIGALKLLEGDTVAIIGPQHAVMAHLLSHLANELHVPLLSFTALDATLSPLQYPYFVQTAPNDRFQMTAIADMISYFGWREIIVVFSDDDPSRNGVTVLGDKLAEKRCRISYKAILPSDLTATPSDITAQLSKVKCMEARVIVLNTYSKPGLLVLDIAQKLGMMGEGYVWIATNWLSTVLDSTSSLPVHTSYSIQGVITLRHHTPQSKRKQAFMSRWKQMSNGSIGLNPYGLYAYDSVWILAHALKLFFDQNGTISFSNNTKLSGMRGDTLDLGALSIFNGGKQLLDNILRTNMTGLTGPIQFDSDRSPLHPSYVILNVINGGLRKIGYWSNYSGLSVISPEKLHTKAANRSISNQHLSRIVWPGGTTEKPRGWVFPNNGRQLRIGVPNRVSYRNIVSQINGTNAVQGYCIDVFLAAIKLLPYPVPYRFILFGDGHKNPNYYDLVNMITSDVFDAAVGDIAIVTDRMKIVDFTQPYIGSGLVVVAKVKTSKSSAWAFLRPFTPLMWGVTTVFFLIVGAVVWIVEHRTNDEFRGPPKKQIVTILWFSLSTMFFAHRENTVSALGRVVLIIWLFVVLVINSSYTASLTSILTLQQLSSPITGIDTLIASSEPIGFPVGSFAENYLAQELNIPKYRLIPLGSPEEYAIALERGTVAAVVDERPFVELFMSDHCKFSIRGQEFTKGGWGFAFPRDSPLSIDMSTAILTLSENGELQKIHERWLSESACKFHKTENESEQLQLESFWGLFLICGIASFLALLVYFILMVLRFSRDFPRNDDPSNGSRLPSACIQTFLNFVDEKEDVSQRKLKRKRYMS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0005 902 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Bisa04g0005 902 Pfam Receptor family ligand binding region 54 409 IPR001828 -
Bisa04g0005 902 Gene3D - 151 425 - -
Bisa04g0005 902 Gene3D - 54 400 - -
Bisa04g0005 902 Gene3D - 774 807 - -
Bisa04g0005 902 Gene3D - 583 700 - -
Bisa04g0005 902 CDD GluR_Plant 470 808 - -
Bisa04g0005 902 Gene3D - 738 773 - -
Bisa04g0005 902 FunFam Glutamate receptor 709 812 - -
Bisa04g0005 902 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 859 IPR015683 -
Bisa04g0005 902 FunFam Glutamate receptor 467 583 - -
Bisa04g0005 902 SUPERFAMILY Periplasmic binding protein-like I 33 464 IPR028082 -
Bisa04g0005 902 Pfam Bacterial extracellular solute-binding proteins, family 3 493 809 IPR001638 -
Bisa04g0005 902 Gene3D - 458 582 - -
Bisa04g0005 902 FunFam Glutamate receptor 151 310 - -
Bisa04g0005 902 SMART GluR_14 473 810 IPR001320 GO:0015276|GO:0016020
Bisa04g0005 902 PIRSF IGluLR_plant 4 900 IPR017103 -
Bisa04g0005 902 FunFam Glutamate receptor 583 713 - -
Bisa04g0005 902 CDD PBP1_GABAb_receptor_plant 37 427 IPR044440 -
Bisa04g0005 902 SUPERFAMILY Periplasmic binding protein-like II 449 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0005 Bisa-ChrBisa04 192972 197574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0005 22 899 Ion Channels AT2G17260 61.348 0.0 1126