Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g0002 ATGGGCAACTCATGCCGCGGATCTTTGAAAGGAAAACATTTTCAGGGCTTCAGCCAGCCCGAAGACCATTCCACTGCCCATTCCAAGCGCAGCATTCCTTCTGATTGCTCTAACTCAGACTATCACCCCTCAAGCTTGAACTCCCAGAAGCTCGTAGCCAAAGAAAACCCAAATAAAGATATCAATAACGGCTCTTGTACAGATCACTGTAGCAATAGCAGTAATCTACCATTCATCTTTCCGCCCAAGAAAGACACCATCATGAGGCGGAGCGCTGATAACCAAGCATATTATGTATTGGGTCATAAGACTCCTAATATTCGTGATCTATACACTCTAGGCCGTAAATTGGGACAGGGACAATTTGGCATAACTTATTTATGCACTGAGAATTCCACGGGCATTGAATATGCATGTAAGTCCATCTCTAAGAGGAAGCTGATCTCCAAGGAAGATGTTGAGGATGTTAGGAGGGAAATTCAGATAATGCACCATTTAGCAGGTCACAAGAATATTGTTACCATTAAGGGTGCTTATGAGGATTCGTTGTATGTGCATATTGTCATGGAGCTATGTTCTGGGGGCGAGTTGTTTGATCGAATCATCCAGAGGGGCCACTACAGTGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTAGGAGTTGTCGAGGCATGTCATTCCCTTGGGGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTATTGGTCAACAAAGATGATGATTTCTCACTCAAAGCAATTGACTTTGGACTTTCTGTTTTCTTCAAACCAGGTCAAATTTTCACTGATGTAGTTGGCAGCCCTTATTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCAGAAGCCGATGTATGGACAGCAGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCGTTCTGGGCAGAAACCCAGCAGGGTATATTTGATGCGGTGTTGAAGGGACATATAGATTTTGAATCAGATCCATGGCCTCTAATATCTGATAGTGCAAAAGATCTGATCCAGAAGATGCTATGTTCACGGCCTTCAGAACGGTTGACTGCCCATGAAGTGTTATGTCATCCGTGGATATGTGAAAATGGAGTTGCCCCTGATAGGGCACTGGATCCTGCTGTCCTTTCTCGTCTCAAACAGTTCTCTGCAATGAACAAGCTAAAGAAAATGGCTTTGCGGGTAATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTCTGAAAGAAATGTTTAAGGCCATGGATACTGATAACAGTGGTGCAATTACTTTTGATGAACTCAAAGCTGGCTTGAGAAGATATGGATCAACTCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAATTTGTTGCTGCGACAGTTCATCTTAACAAATTAGAGCGTGAGGAACATCTCATCGCTGCTTTCCAGTATTTTGACAAGGATGGAAGTGGTTATATTACAGTTGATGAGCTTCAACAAGCTTGTATAGAACATCACATGACTGATGTTTTTCTGGAAGATATTATCAGGGAAGTGGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGTTGCGATGATGCAAAAAGGGAATGCTGGAATTGGAAGGAGGACTATGCGCAACAGTCTCAATTTGAGCATGAGAGATGCACCAGGTTGTACAGCAAAGACAGAAAGAGAAGAATAA 1746 0.4267 MGNSCRGSLKGKHFQGFSQPEDHSTAHSKRSIPSDCSNSDYHPSSLNSQKLVAKENPNKDINNGSCTDHCSNSSNLPFIFPPKKDTIMRRSADNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGITYLCTENSTGIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDSLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISDSAKDLIQKMLCSRPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFVAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACIEHHMTDVFLEDIIREVDQDNDGRIDYGEFVAMMQKGNAGIGRRTMRNSLNLSMRDAPGCTAKTEREE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g0002 581 Pfam EF-hand domain pair 487 548 IPR002048 GO:0005509
Bisa04g0002 581 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
Bisa04g0002 581 CDD STKc_CAMK 111 368 - -
Bisa04g0002 581 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa04g0002 581 ProSiteProfiles EF-hand calcium-binding domain profile. 523 553 IPR002048 GO:0005509
Bisa04g0002 581 FunFam Calcium-dependent protein kinase 1 377 551 - -
Bisa04g0002 581 Pfam Protein kinase domain 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa04g0002 581 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Bisa04g0002 581 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Bisa04g0002 581 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Bisa04g0002 581 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Bisa04g0002 581 SMART efh_1 488 516 IPR002048 GO:0005509
Bisa04g0002 581 SMART efh_1 522 550 IPR002048 GO:0005509
Bisa04g0002 581 SMART efh_1 452 480 IPR002048 GO:0005509
Bisa04g0002 581 SMART efh_1 416 444 IPR002048 GO:0005509
Bisa04g0002 581 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa04g0002 581 Gene3D Transferase(Phosphotransferase) domain 1 197 378 - -
Bisa04g0002 581 SUPERFAMILY EF-hand 409 549 IPR011992 -
Bisa04g0002 581 MobiDBLite consensus disorder prediction 30 45 - -
Bisa04g0002 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Bisa04g0002 581 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Bisa04g0002 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 100 543 - -
Bisa04g0002 581 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Bisa04g0002 581 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Bisa04g0002 581 SUPERFAMILY Protein kinase-like (PK-like) 88 393 IPR011009 -
Bisa04g0002 581 FunFam Calcium-dependent protein kinase 5 197 377 - -
Bisa04g0002 581 FunFam Calcium-dependent protein kinase 1 113 196 - -
Bisa04g0002 581 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Bisa04g0002 581 Gene3D - 379 551 - -
Bisa04g0002 581 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Bisa04g0002 581 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g0002 Bisa-ChrBisa04 97039 112569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g0002 1 570 EF-hand Containing Proteins AT4G35310 82.487 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bisa04g0002 Pkinase 1.9e-72 CL0016