Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3819 ATGGCAAGGAAGAGAAAGGCTAGTGGTAGTTTTGAAGCAGAGGAGGAAAGGTATGATGCGTGTGAGGGAGGCATGGCCTGGGATGAGATGGTGAGGGAGGCTGCAGCACTGGGTGGGGCACGGCGAGCCCGGAAGAGGTTCGTGGGGGTGCGGCAGCGGCCGTCCGGGAGGTGGGTGGCGGAGATAAAGGACACCATACAGAAGATAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCTTGCTTGCTCCGTGGAGCCAACACCAGAACCAATTTCTGGCCTTCAAATCCTTCAAATCCTGCTCTTCCTTCAAAGATCACCAATCTTCTCCTTCAGAGGATCAAAGCAAGAAACAACAACGCCACCAACAACTCTTCTGCTTTTTCGCCTTCTGTTCTCATGAATCACCAACAGAAGCAAGAGGAAGAAACAGAGGAGAAAACAGGGGATACAGAGGAGAAAACAGGGGAAAAAACAGACTTTTCAATTGCTCAATTCACTGACTTCCTTGATGACCCTGAAGATTATTATACCACAACAGAAAGCAATCACAGTGTGCAATTCGACTACATTACTCGCAGTTTCGAGTCGTGTCTAACTGGGAATGGCGAACCAAAAGCAGAGAAATCGAGCAGCTCGGGAGAGGAAAGACAGGAGCAGAGTAGTGAAGAAGAAGATGAAGGAGAAGAAAGTAGTAGCTGTGAGATTAATTTGGGGTTGCAGGATTTTGAGTTTACCTCATCAGGTTGCTGTTATTCTCCATTTGAGATGGCTGGAGAGATTGAGGAGGAAGATGAGGGTGTGGAAGAGAGGTCTTATGTTGGGGATGAGCCTGCAATGGTGAGAGAAGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCTGCTTCTCTGTATGCCTTCAATGGCATATCAGAGTGCTTGAGGATGAAGCTTGGGTTAGAAAACATGAAAGCAAGAGGAGTTCATGAGCAGCTAAACAGTCTTAAGATGGCATGTTCTGGGAAGAACAAGATTAAAGAGAAGCACAACAAGGAAATGGAGAGAAAAGAGGAGGAAAATCAACAAGCAGCATCCATTGATGTTTTGGACTCATCATCATCATCATCATCATCATCTAGTATTGATGGTGAGCTGTTACTATGGAGTTCACTGGATCTTCCTCCCATCTGCTTTGTCAACTATTAA 1218 0.4672 MARKRKASGSFEAEEERYDACEGGMAWDEMVREAAALGGARRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSNPSNPALPSKITNLLLQRIKARNNNATNNSSAFSPSVLMNHQQKQEEETEEKTGDTEEKTGEKTDFSIAQFTDFLDDPEDYYTTTESNHSVQFDYITRSFESCLTGNGEPKAEKSSSSGEERQEQSSEEEDEGEESSSCEINLGLQDFEFTSSGCCYSPFEMAGEIEEEDEGVEERSYVGDEPAMVREAMKRMKYERKFSASLYAFNGISECLRMKLGLENMKARGVHEQLNSLKMACSGKNKIKEKHNKEMERKEEENQQAASIDVLDSSSSSSSSSSIDGELLLWSSLDLPPICFVNY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3819 405 MobiDBLite consensus disorder prediction 130 171 - -
Bisa03g3819 405 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 305 - -
Bisa03g3819 405 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Bisa03g3819 405 MobiDBLite consensus disorder prediction 130 147 - -
Bisa03g3819 405 MobiDBLite consensus disorder prediction 354 384 - -
Bisa03g3819 405 MobiDBLite consensus disorder prediction 368 384 - -
Bisa03g3819 405 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 MobiDBLite consensus disorder prediction 148 169 - -
Bisa03g3819 405 Coils Coil 343 370 - -
Bisa03g3819 405 FunFam ethylene-responsive transcription factor RAP2-11 45 104 - -
Bisa03g3819 405 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Bisa03g3819 405 MobiDBLite consensus disorder prediction 209 244 - -
Bisa03g3819 405 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3819 Bisa-ChrBisa03 81653132 81654349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3819 44 120 AP2-EREBP Transcription Factor Family AT5G19790 76.623 3.45e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa03g3819 AP2 7.9e-15 CL0081