Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa03g3805 | ATGGGGTCGAAATTTACGAAGGAGGAACCGCCCAAAATCGAAAACCTGAGTTTACATCATCACATGATCAACTACCTTGCCAAAAAGTTATATATCCGCAACTTAGTATCAAAGCAACGGAGGAGGATGCTCATTGATGGCTATGATCTTGACATGTCATATATCACAGATCAATTACTAGCAATGTCATTTCCTGCAGAACGTATGCGAGCAATGTATAGAAATCCACTCTGGCAGGTCAAATCTGTGCTGGATACAAGACATCATGAGCATTATAAGATATATAATCTCTGTATAGAAGAAAATTATGATGAAGCACACTTTTATGGTCGTGTGGAAGCATATCCTTTTGATGATAACCATGTTCCACCTCTTCAAATGATCAAGAACTTCTGTGAAAGTGTGCATTCTTGGCTATCAAGTGACCCAAAAAATATTGCTGTCATTCATTGCATGGCAGGAAAGGGTAGAACTGGCTTAATGGTGTCTGCATACTTAGTTTACTGCGGCATGTCAGCTGATGAGGCTCTTCAATTGTATGCAGATAGGCGGACAACCAATAATGAAGGAGTATCGATACCAAGCCAACGCCGTTATGTACAGTACTGGGAAAGTATACTTTCCATTTCTGAGGGCATTGGTAATAGCCCAGCAAATGTGAGCTTACCTAAACCATGTAGCAGAGAACTGCGGAGAATCCGGCTTTATGATACAGTTAACATTGACACAATCTTCTTTGTGATCTTAGAGATGCAGGAGGTTCCTAATCAGGATTACCGTCCATCAGTGGAAATTACTAAGAGTAGCTGCAGACAGATTAAGAAAGGCTACCAGGGAAACTACAGTCCTCGCTATTATCTATCTTATATCAAAGGTGATGAAGATGGAATTGAATCAAATTTAGAGGAACCTCATGTTGTAGTCCAAATGGACACTGAGGATCCTTCAATCTACCAGAAATCTTGTCTGGACCGTTATTTTGACAAACCTATTCAAGTTTCTGGAGATGTTCGTGTCATATTCTATGAGAAAATGGTCGGAGGGCGTCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAATGGCTTGCTACAGCTCAAAATTAAGGACTTGGACAAAGTTGGGAAAAAAGGAAGATCACTATGTGGCTCAGCCTTCTGCTTAGAACTTTTGTTTGGCCCTGCCAATACAAAGCGTTCGCCATCTGAGATCGACGGTGGGAATTCCATTGATGAATATATCTAA | 1248 | 0.403 | MGSKFTKEEPPKIENLSLHHHMINYLAKKLYIRNLVSKQRRRMLIDGYDLDMSYITDQLLAMSFPAERMRAMYRNPLWQVKSVLDTRHHEHYKIYNLCIEENYDEAHFYGRVEAYPFDDNHVPPLQMIKNFCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVSAYLVYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVQYWESILSISEGIGNSPANVSLPKPCSRELRRIRLYDTVNIDTIFFVILEMQEVPNQDYRPSVEITKSSCRQIKKGYQGNYSPRYYLSYIKGDEDGIESNLEEPHVVVQMDTEDPSIYQKSCLDRYFDKPIQVSGDVRVIFYEKMVGGRLFYCCFNTAFIKNGLLQLKIKDLDKVGKKGRSLCGSAFCLELLFGPANTKRSPSEIDGGNSIDEYI | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa03g3805 | 415 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
| Bisa03g3805 | 415 | Pfam | C2 domain of PTEN tumour-suppressor protein | 313 | 393 | IPR014020 | - | |
| Bisa03g3805 | 415 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 30 | 401 | - | - | |
| Bisa03g3805 | 415 | CDD | PTP_PTEN | 51 | 204 | IPR045101 | GO:0016791 | |
| Bisa03g3805 | 415 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
| Bisa03g3805 | 415 | Gene3D | Protein tyrosine phosphatase superfamily | 27 | 211 | IPR029021 | - | |
| Bisa03g3805 | 415 | Gene3D | - | 259 | 398 | - | - | |
| Bisa03g3805 | 415 | Pfam | Tyrosine phosphatase family | 141 | 182 | IPR026893 | GO:0004721 | |
| Bisa03g3805 | 415 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 396 | IPR014020 | - | |
| Bisa03g3805 | 415 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
| Bisa03g3805 | 415 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 299 | 395 | IPR035892 | - | |
| Bisa03g3805 | 415 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN | 28 | 211 | - | - | |
| Bisa03g3805 | 415 | SMART | PTEN_C2_2 | 223 | 395 | IPR014020 | - | |
| Bisa03g3805 | 415 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 45 | 207 | IPR029021 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa03g3805 | Bisa-ChrBisa03 | 81284759 | 81289341 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa03g3805 | 21 | 399 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 68.766 | 0.0 | 554 |