Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3696 ATGACTAGAGAGAAAGTGAAACATGAGTACATCACCGATAACGCCAAAAGAAAAGTATCATTCAGGAAAAGAAAAGGAAGCATCATGAAGAAGATACATGAACTCAGCATCCTTTGTGGTGTTCCGGCTGCCGCTGTTGTTTACAGCAGCTCCTCTGATCCACAGCCAGAGGTTTGGCCTGACCCAGAAGGAGCACGAAATGTGATTGAGAGGTATCGAGCTAAGCCTCTCTTGTTGGACAAGACCCTGAACCAAGAGGCTTTCATCCGGCAGAGGATTAACAAAGAAAGAGAGCACCTGAAGAAGCGATGTAAGGAAAACTATGAAGAAGAGATTAACCAACTTATGCTCAACTGCCTGGGAGGGCAAACACAGCCCAATTTGTCTATGCAGTATGCGGCTGACATGAAGGCGGTGATTGATCAGCGTTTGAAGCTCATTAACATGATGATGGAGGCATCAAACAAAGGAGTGGAAGACTATGTTCCAGCTCAACCAGCATCAGAAGGTTTGCCAATCACTGGAGAGAATGAGAAGTTGATGGACCAATCTCTGCAGTATGGGAAGAACCCTAACAAGGAAGTGGAAGTCTATGTTCCAGCTCCACCAACATCAAATGGATTGCCAATCAATGGAGGAAATGAAAAGTTGGATGACCAAATTCTGCAGTATGGCCTGGACTCTGACAACATGAATAATCTGCCATGGTGGAAGAACATTGATAATATGGAAGAGTATATGGGCTTTGGTGTTGCAAGTGATATGCCACCTCCTTTTAGCAATGCCAACTACCAAAATGCTTCTTTGTCTTACAACCCATTTTCTCCTTGA 831 0.4428 MTREKVKHEYITDNAKRKVSFRKRKGSIMKKIHELSILCGVPAAAVVYSSSSDPQPEVWPDPEGARNVIERYRAKPLLLDKTLNQEAFIRQRINKEREHLKKRCKENYEEEINQLMLNCLGGQTQPNLSMQYAADMKAVIDQRLKLINMMMEASNKGVEDYVPAQPASEGLPITGENEKLMDQSLQYGKNPNKEVEVYVPAPPTSNGLPINGGNEKLDDQILQYGLDSDNMNNLPWWKNIDNMEEYMGFGVASDMPPPFSNANYQNASLSYNPFSP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3696 276 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Bisa03g3696 276 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Bisa03g3696 276 PANTHER MADS BOX PROTEIN 3 136 - -
Bisa03g3696 276 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Bisa03g3696 276 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa03g3696 276 Coils Coil 90 110 - -
Bisa03g3696 276 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bisa03g3696 276 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g3696 276 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g3696 276 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g3696 276 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3696 Bisa-ChrBisa03 77583854 77584684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3696 1 170 Type I MADS-box Gene Family AT5G48670 40.113 3.14e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa03g3696 SRF-TF 6.9e-15 No_clan