LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g3695	ATGACTAGAGAGAAAGTGAAACATGAGTACATCACCGATGATGCCAAAAGAAAAGTATCATTCAAGAAAAGAAAAGGAAGCATCATGAAGAAGATACATGAACTCAGCATCCTTTGTGGTGTTCCGGCTGCTGCTGTTGTTTACTGCAGCCCCTCTGATCGACAGCCAGAGGTTTGGCCTGATCCAGAAGGAGCACGAAATGTGATCGAGAGGTATCGAGCTAAGCCTGTCTTGGACAAGACCCTGAATCAAGAGGCTTTCATCCGGCAGAGGATTAACAAAGAAAGAGAACGCCTGAAGAAGCGATGCAAGGAAAACTATGAGGAAGAGATTGATCAACTTATTCTCAACTGCCTGGGAGGGCAAACACAGCCCAATTTGTCTATGCAGTATACAGCTGACATGAAGACAGCGATTGATCAGCGTTTGAAGCTCTTTAACATCATGGAGGCATCGAACAAAGGAGTGGTAGACTATGTTCCTGCTCCACCAGCATCAGAAAGTTTGCTAATCACTGGAGAGAATGAGAAATTGATGGACCAAACTCTGCAGTATGGCAGGGACCCTAGCAAGGAAGTGGAAGTCTATGTGCCAGCTCCACCAATGTCAAATGGATTGCCAATCAATGGAGAAAATGAAAAGTTGGATGACCAAATTCTGCAGTATGGCCTGGACTCTGATAACTTTGATAATTCGCCATGGTGGAAAAACATTGATGATATGGAAGAGTATATGGGCTTTGGTGCAAGTGACATGCCACCTTCTTTTAGCAATGCCAACTACCAAAATGCTTCTTCGTCTTACAACCCATTTTCTCCTTGA	822	0.4416	MTREKVKHEYITDDAKRKVSFKKRKGSIMKKIHELSILCGVPAAAVVYCSPSDRQPEVWPDPEGARNVIERYRAKPVLDKTLNQEAFIRQRINKERERLKKRCKENYEEEIDQLILNCLGGQTQPNLSMQYTADMKTAIDQRLKLFNIMEASNKGVVDYVPAPPASESLLITGENEKLMDQTLQYGRDPSKEVEVYVPAPPMSNGLPINGENEKLDDQILQYGLDSDNFDNSPWWKNIDDMEEYMGFGASDMPPSFSNANYQNASSSYNPFSP	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g3695	273	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Bisa03g3695	273	Coils	Coil	89	109	-	-
	Bisa03g3695	273	CDD	MADS_SRF_like	2	83	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Bisa03g3695	273	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	54	IPR002100	GO:0003677\|GO:0046983
	Bisa03g3695	273	Gene3D	-	13	105	IPR036879	GO:0003677\|GO:0046983
	Bisa03g3695	273	ProSiteProfiles	MADS-box domain profile.	1	50	IPR002100	GO:0003677\|GO:0046983
	Bisa03g3695	273	PANTHER	MADS BOX PROTEIN	3	117	-	-
	Bisa03g3695	273	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Bisa03g3695	273	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Bisa03g3695	273	SMART	madsneu2	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g3695	Bisa-ChrBisa03	77576162	77576983	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g3695	1	147	Type I MADS-box Gene Family	AT5G48670	43.046	3.21e-29	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Bisa03g3695		SRF-TF	6e-15	No_clan