LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g3674	ATGGTCGTTCTATCGATTTCACCCACCTTCACCAAATCTATAACCTCTTCAATTCTCAAGCCTGCTCAAAGAGTCCAAATTCATCACCATCCCATAAACCTTACATTGCCTAACGCATCCCTCAAAACAACGCATTTCAATCTTTCTCTTTCTTCTCCTCCTTCTTCTTCTTTCAGTTCCGGTAATTGTTTTTATTCCAGGACAGCGGCAACTTCAACAACCACGTACACTTCCTTCGCTTCTTCCACTACCGAGAATCGCCATTGGATAGTGATAATGGAGAAGCCTCCACAAGGGTTCGATTCTAAGCCACAGGTCATTGATTATTACGTTCAAACTCTACAAAGAGTTCTCGGCAGTGAGAAAGAGGCTCAAATGTGTATATATAATGCTTCCTGGGATACCCACTTCGGATTTTGCTGCGACATAGATGAAGAAACTTCCTCCCAGCTCGCTTGTTTACCAGCGGTCATATCGGTTAAGCCTGATCCAGATTTCAACTCCTTAGAGAAGGATTATAGGTCACCAAACGAGCAGGCAGATAATTTGTCAAAACCAGACACTGGAGCCACTTTGTTGTTCCCTGCAGGGACTTCGAAGCAGTGGCTTGTTAGAATGGATAAACCGGGGATTGGGGTTGTCACGAAGGCCCAAGTTGTTGATTATTATGCACAAATACTGACCAAAGTTATGGGAAATGAGAGGGATGCGCAAATGTGTATATACCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGCGCACGAGAGCTAACTGGCGTGCCTGGTGTCTTATCAGTTCAGCCAGATACTAATTTTGAGTCAGAAAATAAGGATTATGGAGGTAGTAATTTAGACAACAGTTTGAATGTGTTGAACTCTTCTGAAGCAAGTCAGACAACTCCTGTAAAAACAAAAAAGCTTTTTGTGACAGGACTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCGTTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTCTGGAATACACCACGGAGGAGGCTGCAAGTGCAGCATTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTCGATGTTGCCAAAACTAGCCCACCAAAATACAACAGGGGTCGTGCCAGATCCATGACTTGA	1215	0.4247	MVVLSISPTFTKSITSSILKPAQRVQIHHHPINLTLPNASLKTTHFNLSLSSPPSSSFSSGNCFYSRTAATSTTTYTSFASSTTENRHWIVIMEKPPQGFDSKPQVIDYYVQTLQRVLGSEKEAQMCIYNASWDTHFGFCCDIDEETSSQLACLPAVISVKPDPDFNSLEKDYRSPNEQADNLSKPDTGATLLFPAGTSKQWLVRMDKPGIGVVTKAQVVDYYAQILTKVMGNERDAQMCIYHVSWKTNFGFCCELDEDCARELTGVPGVLSVQPDTNFESENKDYGGSNLDNSLNVLNSSEASQTTPVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFLEYTTEEAASAALKEMNGKIINGWMIVVDVAKTSPPKYNRGRARSMT	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g3674	404	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	314	380	IPR000504	GO:0003723
	Bisa03g3674	404	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	312	390	IPR000504	GO:0003723
	Bisa03g3674	404	FunFam	Organelle RRM domain-containing protein 1, chloroplastic	280	404	-	-
	Bisa03g3674	404	SMART	rrm1_1	313	386	IPR000504	GO:0003723
	Bisa03g3674	404	SUPERFAMILY	RNA-binding domain, RBD	302	400	IPR035979	GO:0003676
	Bisa03g3674	404	Gene3D	-	289	404	IPR012677	-
	Bisa03g3674	404	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	70	167	IPR037045	-
	Bisa03g3674	404	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	195	280	IPR037045	-
	Bisa03g3674	404	PANTHER	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	185	381	IPR039206	GO:0016554

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g3674	Bisa-ChrBisa03	76987506	76991725	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g3674	309	394	C2H2 Transcription Factor Family	AT2G19380	34.884	6.11e-12	65.5