LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g3653	ATGTATTGCAATTTCAAGGAGAATGCAGCAGAGTATGTGAAGCAAGCAGTTCATGAGGATGATGCTGGAAACTATAGGAAGGCATTTACCCTTTATATGAATGCATTAGAATACTTGAAGGCTCATTTGAAGTATGAGAAGAACCCCCAGATCAAGGAATTAATAACCCAGAAATTTGTTCAATACTTGAGGAGGGCGGAGGAGATACGTACCATTCTTGATGCAGGAAGAGGAAGTGGGCCTAATTTGTCCAGTGGTGCGGCTCAGTCTGATCCTGTAAGATCAAATACAAAGTCGAGGGGTCGAGAAGAGAGAGATAAGGAGGATCCGGAGAAAGCAAAGCTCAAAGCTGGTCTTGATTCTGTAATAATCAGAGAGAAACCAAACGTCAAATGGAGTGACGTTGCTGGGCTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTCATATTGCCTGTTAAGTTCCCCCAATTTTTTACTGGGAAGAGACAACCATGGAGAGCATTTCTATTATATGGTCCACCAGGAACAGGGAAGTCATATTTAGCAAAGGCAGTAGCTACAGAGGCAGACTCGACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAATGGATGGGTGAGAGTGAAAAGCTGGTTTCCAATCTTTTTCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAAATTGATTCTTTATGTGGCCAACGAGGTGAGGGCAATGAGAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTGTGGGTAAAGAAGATCAGAAAGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTGGATCAGGCCATCCGACGACGCTTTGACAAACGGATATACATACCTCTTCCAGATATGAAGGCAAGGCAGCACATGTTTAAGGTGCATCTTGGAGATACTCCACATAACTTAAGTGAAAAAGATTTTGAGGAATTGGCCCGCAAAACCCATGGATTCTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTTCTTTTTGAACCTGTTCGTAAAACCAGGGATTCTAAATTCTTTAAGCAAACCTCGAATGGAATGTGGGTCCTTTGCGAACCTACTGAAAGAGGAGCTGTTAAAATTGGCCTGCAAGAACTTGATGCACAAGGTCTTGCTTCAAAGATTGTACCACCACCGATTACAAGAGCAGATTTTGATAAAGTATTAATGAGGCAGAAGCCAACAGTAAGTAAAGCTGATCTTGAGGTGCATGAGAGATTCACTCAGGAGTTTGGGGAGGAGGGCTGA	1311	0.4233	MYCNFKENAAEYVKQAVHEDDAGNYRKAFTLYMNALEYLKAHLKYEKNPQIKELITQKFVQYLRRAEEIRTILDAGRGSGPNLSSGAAQSDPVRSNTKSRGREERDKEDPEKAKLKAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKEDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLSEKDFEELARKTHGFSGSDISVCVKDVLFEPVRKTRDSKFFKQTSNGMWVLCEPTERGAVKIGLQELDAQGLASKIVPPPITRADFDKVLMRQKPTVSKADLEVHERFTQEFGEEG	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g3653	436	MobiDBLite	consensus disorder prediction	96	114	-	-
	Bisa03g3653	436	Pfam	Vps4 C terminal oligomerisation domain	369	433	IPR015415	-
	Bisa03g3653	436	PANTHER	AAA DOMAIN-CONTAINING	23	434	-	-
	Bisa03g3653	436	ProSitePatterns	AAA-protein family signature.	271	290	IPR003960	GO:0005524\|GO:0016887
	Bisa03g3653	436	Pfam	ATPase family associated with various cellular activities (AAA)	170	299	IPR003959	GO:0005524\|GO:0016887
	Bisa03g3653	436	SUPERFAMILY	MIT domain	4	79	IPR036181	-
	Bisa03g3653	436	FunFam	vacuolar protein sorting-associated protein 4A	301	416	-	-
	Bisa03g3653	436	MobiDBLite	consensus disorder prediction	75	114	-	-
	Bisa03g3653	436	Gene3D	-	6	75	-	-
	Bisa03g3653	436	Gene3D	-	128	424	IPR027417	-
	Bisa03g3653	436	CDD	RecA-like_VPS4	127	297	-	-
	Bisa03g3653	436	Pfam	MIT (microtubule interacting and transport) domain	8	70	IPR007330	-
	Bisa03g3653	436	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	431	IPR027417	-
	Bisa03g3653	436	SMART	smart	2	80	IPR007330	-
	Bisa03g3653	436	FunFam	Suppressor of K+ transport growth defect 1	6	75	-	-
	Bisa03g3653	436	Gene3D	-	301	416	-	-
	Bisa03g3653	436	SMART	AAA_5	165	301	IPR003593	GO:0016887
	Bisa03g3653	436	FunFam	Vacuolar protein sorting-associated protein 4	128	308	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g3653	Bisa-ChrBisa03	76153225	76157495	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g3653	164	357	Calmodulin-binding Proteins	AT3G56690	37.245	4.66e-37	142

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa03g3653	03	76153225	76157495	Bisa03g3653	03	76153225	76157495	ECH