Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3563 ATGATAGGGTTTCACTATCCAACGGCGAAGAATGTGTTACTGCTAAACTATAAATTCGAGAACGTCGATGTTGCATTTCTCTTCCTTCTCCTGCTTCTGCACCTCATTGCTGTAACCCAACTGAAGCAGGAGAAATATCTACCTCCTTCCCCTTCCTACGCCCACCGACACAAAGCCATGCCTTCTCTACTAGTTTCTGATGCTGTTCTATCTGAGACTTCCAAAGATAAGACGGAGAAGAAGAAGATGAAAAACCAGACTCCAGTTGAAGAAGATGGGTTTTCCGTCAAGAAGAAGAAAGACAGCAAGAAGCGTAAGGCTTTGAATACTGAGATTGTGGCGGATGAGGATGAAGAGAAGAGTGAGACTAGTTTCGAGTTAGTTGAGCCCGATTGTTCGAAAGCAAAGAGTGAGACTAGTTTCGAGTTAGTTGAGCCCGATTGTTCGAAAGCTAAGAGTGAGAAGAAGAAGAAGAAGAAGAAGGCCAAATTGGACGAGCCTGAAGTAGAAGAGGTAGAGGTTGAGAAGGATCCTAATGCAATTTCGAACTTCAGGATATCGGCGCCGTTGAGGGCGAAGCTGAAGGAGAAGGGGATTGAATCTCTATTTCCCATTCAGGCCATGACTTTTAATACCATTCTCGATGGGTCTGATTTGGTTGGTCGGGCTCGTACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTGCCCATCTTGGAGTCATTAACAAACGGTCCAGCAAAAGCAGTAAGGAAAACTGGGTACGGAAGGTCTCCAAGTGTTCTTGTGCTTTTACCCACTAGAGAATTGGCTAATCAGGTGTCCGCTGATTTTGAAGTTTATGGTGGGGCACTGGGATTGACTTCTTGCTGTTTATATGGTGGAGCTTCATATCAAGCTCAAGAAATTAAACTCAAGAGAGGTGTTGATATTGTTGTTGGAACTCCAGGACGCATAAAGGATCACATAGAGAGGGGAAATATTGACCTAAGCCAACTAAGGTTCCGTGTCCTCGATGAAGCGGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGAATATTTCTAAAAGATTTCTGAAATCAGATAAGAAAACTGCTGACCTTGTTGGGAATGAGAAAATGAAAGCTAGCACCAGTGTTAGACATATTGTTCTTCCGTGTTCTAGTTCAGCCAGGGCCCAGCTTATCCCAGACGTTATACAGTGCTATAGCAATGGAGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCTGAGCTTTCAGGGTTGTTGCCTGGTGCACGGGCTTTGCATGGTGATATACAGCAGGCACAGCGTGAGGTTACATTGGCTGGTTTCAGGTCTGGGAAATTTAAGACATTAGTGGCAACTAATGTGGCAGCTCGGGGTCTGGACATTAATGATGTTCAGTTAATTATCCAGTGTGAGCCCCCGCGTGATGTAGAAGCCTATATCCATCGATCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTACGATCCAAGAAGGTCAAATGTATCTAGAATAGAAAGAGAATCGGGTGTGAAGTTTGAACACATATCTGCTCCCCAGTCTGCTGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTAATATGATAACCAAAGTGTCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCCGAGGATCTTTTAAACAGCTCGGGTTTATCAGCCGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTTCACTGAGATAAAGAAAAGATCGCTTCTCACTTCCATGGAGAATCATGCGACATTGCTTCTTGAGATTGGAAAACCCATCTTCACCCCTTCTTTTGCATTTGGAGTCCTGAGGAGATTCTTGCCAGAGGAGAAGGTTGAGGCAGTGAAGGGTCTTACTCTCACAGCTGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTACTGGTCAGGAGAATGCTGCCAATGTTAGTTTAGAGGTGTTAACAACATTGCCAAGTTTGCAAGAAAGAGACCAATCAAGAGGTAGATTTGGTGGGGGCCGTGGTGGCGGCGGCAGATTTTCAGGTGGAAGGGGTGGCGGTCGGTTTTCTAACCAGAGGAATGGTAGGTTTTCCAATGGTTTTAAGGGCGGGAGAGGTCGTGGTAACAATGGGGGAAAGAGATGGTAA 2289 0.4487 MIGFHYPTAKNVLLLNYKFENVDVAFLFLLLLLHLIAVTQLKQEKYLPPSPSYAHRHKAMPSLLVSDAVLSETSKDKTEKKKMKNQTPVEEDGFSVKKKKDSKKRKALNTEIVADEDEEKSETSFELVEPDCSKAKSETSFELVEPDCSKAKSEKKKKKKKAKLDEPEVEEVEVEKDPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAVRKTGYGRSPSVLVLLPTRELANQVSADFEVYGGALGLTSCCLYGGASYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPDWVKNISKRFLKSDKKTADLVGNEKMKASTSVRHIVLPCSSSARAQLIPDVIQCYSNGGRTIIFTETKESASELSGLLPGARALHGDIQQAQREVTLAGFRSGKFKTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSRIERESGVKFEHISAPQSADIAKAVGGEAANMITKVSDSVIPAFKSAAEDLLNSSGLSAVELLAKALAKAVGFTEIKKRSLLTSMENHATLLLEIGKPIFTPSFAFGVLRRFLPEEKVEAVKGLTLTADGNGAVFDVPAEDLDTYLTGQENAANVSLEVLTTLPSLQERDQSRGRFGGGRGGGGRFSGGRGGGRFSNQRNGRFSNGFKGGRGRGNNGGKRW 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3563 762 Gene3D - 129 392 IPR027417 -
Bisa03g3563 762 MobiDBLite consensus disorder prediction 74 98 - -
Bisa03g3563 762 Pfam GUCT (NUC152) domain 613 708 IPR012562 GO:0003723|GO:0004386|GO:0005524
Bisa03g3563 762 MobiDBLite consensus disorder prediction 709 762 - -
Bisa03g3563 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 421 574 IPR001650 -
Bisa03g3563 762 MobiDBLite consensus disorder prediction 147 171 - -
Bisa03g3563 762 Pfam DEAD/DEAH box helicase 203 380 IPR011545 GO:0003676|GO:0005524
Bisa03g3563 762 Gene3D - 407 631 IPR027417 -
Bisa03g3563 762 CDD DEADc 190 387 - -
Bisa03g3563 762 CDD SF2_C_DEAD 407 533 - -
Bisa03g3563 762 CDD GUCT_RH7_like 620 705 - -
Bisa03g3563 762 Pfam Helicase conserved C-terminal domain 426 524 IPR001650 -
Bisa03g3563 762 MobiDBLite consensus disorder prediction 74 100 - -
Bisa03g3563 762 SMART ultradead3 198 410 IPR014001 -
Bisa03g3563 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Bisa03g3563 762 MobiDBLite consensus disorder prediction 106 125 - -
Bisa03g3563 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 536 IPR027417 -
Bisa03g3563 762 FunFam DEAD-box ATP-dependent RNA helicase 7 630 702 - -
Bisa03g3563 762 SUPERFAMILY RNA-binding domain, RBD 617 700 IPR035979 GO:0003676
Bisa03g3563 762 Gene3D - 632 703 - -
Bisa03g3563 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 392 IPR014001 -
Bisa03g3563 762 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 140 576 - -
Bisa03g3563 762 SMART helicmild6 443 524 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3563 Bisa-ChrBisa03 72546539 72551355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3563 198 530 Eukaryotic Initiation Factors Gene Family AT1G72730 31.454 6.79e-42 156