LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g3552	ATGCCCTCGAAATGTCTCTGTTGTTTCCTCCCTCAAGAAGATCACAAAAACAAAACAAGCAAAAATAGGGACTATCCATGGGAATTTTACACTCTCAAGGAGTTGCTTCGCGCAACAAACAATTTCCATCAAGATAATAAGATTGGAGAGGGTGGCTTTGGAAGCGTTTATTGGGGTCGAACAATGAAGCGACTGAAAACGATGACTGCAAAGGCAGAGATGGAATTTGCAGTTGAAGTAGAAGTCCTTGGAAGAGTGAGGCATGAGAATCTGTTGGGTCTAAGAGGATTCTATGCGGGAGGGGATGAAAGGTTAATTGTGTATGATTACATGCCCAATCATAGCTTGCTCACTCATTTGCATGGTCACCTTGCTTCACAATGTCAACTAGATTGGCCTAAAAGAATAAGCATAGCCATTGGAGCAGCTGAAGGCTTAGCGTACTTGCACCATGAAGCAAATCCTCACATTATACACAGAGACATAAAGGCAAGTAACGTTCTTTTAGACACAGAGTTTGAAGCAAAGGTGGCTGACTTTGGATTTGCAAAGTTAATACCAGAGGGTAAAAGCCATCTGACGACAAGGGTGAAAGGAACCTTGGGATACTTAGCGCCTGAGTACGCCATGTGGGGAAAGGTTTCTGAGAGCTGCGATGTGTATAGCTTTGGGATATTGCTTTTGGAGATCATTAGCGCTAAGAAACCAATAGAGAAACTGCCTGGGGGAGTGAAAAGGGATATAGTTCAATGGGCCACACCTTTAGCTCAAAAGGGTGTCTTCAACCATATTGCAGATCCAAAGCTGAAGGGGAAGTTTGATATGGAGCAGTTGAAATCTGTGGTGATGCTAGCTTTGAAATGCACTGATAGTAGCCCTGAGAAGAGGCCTAGCATGGCTGTGGTTGTGGAAAGGCTCAAGGGAGGCGTTGGGAGGAGAAGAAAAGAGATTAAAGCTTTGCCGGACAACGACGGAGGTCAGGTTGCTGCCGACTATGACGAACAGTTGGGAAAGAGTCAATCCAATTTGAGAGTACCAAGTGATAGATATAAAATAAGATAG	1062	0.4407	MPSKCLCCFLPQEDHKNKTSKNRDYPWEFYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTMKRLKTMTAKAEMEFAVEVEVLGRVRHENLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGHLASQCQLDWPKRISIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFEAKVADFGFAKLIPEGKSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGVKRDIVQWATPLAQKGVFNHIADPKLKGKFDMEQLKSVVMLALKCTDSSPEKRPSMAVVVERLKGGVGRRRKEIKALPDNDGGQVAADYDEQLGKSQSNLRVPSDRYKIR	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g3552	353	SUPERFAMILY	Protein kinase-like (PK-like)	23	304	IPR011009	-
	Bisa03g3552	353	CDD	STKc_IRAK	48	308	-	-
	Bisa03g3552	353	Gene3D	Transferase(Phosphotransferase) domain 1	111	318	-	-
	Bisa03g3552	353	Gene3D	Phosphorylase Kinase; domain 1	9	110	-	-
	Bisa03g3552	353	SMART	serkin_6	42	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g3552	353	FunFam	PTI1-like tyrosine-protein kinase At3g15890	111	321	-	-
	Bisa03g3552	353	PANTHER	OS01G0253100 PROTEIN	20	312	-	-
	Bisa03g3552	353	MobiDBLite	consensus disorder prediction	320	353	-	-
	Bisa03g3552	353	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
	Bisa03g3552	353	ProSiteProfiles	Protein kinase domain profile.	42	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g3552	353	Pfam	Protein kinase domain	42	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g3552	353	FunFam	PTI1-like tyrosine-protein kinase At3g15890	14	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g3552	Bisa-ChrBisa03	72215793	72217978	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g3552	15	310	Receptor kinase-like Gene Family	AT5G45780	44.231	6.51e-81	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Bisa03g3552		Pkinase	1e-40	CL0016