Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3550 ATGGATTTCAATCTCGACACAGAAAGCTCCTGGCCGTTGGATCAGATATCATTCTTCTCCAACCCGGCGTCGCCTTTTGTTATCTCTACCTCCTCCGAGGGGCCCTTTTCTCCACTTTGGGCTTCCTCAGACGTAGACGAAGACACGCAAGCTAGAACTGCCGCTTCAGCCTTCTCCGATTGCCATCAGTATTTCTCCTGCAATTCAAGTTCAATAAATAGAAAGCCAAAGGAAAATGATGAAAACGAGAAACTCTCGGCACCCTTTGTGGCTCTACCACCATTAGAGAATCCAAATAGGTACTGTCTAATCAAGGAAAGGATGACACAAGCACTTCGCAACTTCAAAGAATTGACAGAACAAAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGGAATCGGTATGTGCTCACAACTTCAGGGCAACCGTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTACAGAACTGTCTCTCTGACATACGCATTTTCAGTGGATGCGGAGAGTGATGGAATCCTGGGACTTCCAAGTCAAGTTTTTCAAAAGATGTTACCCGAATGGACCCCCAATGTTCAGTATTATTCTAATAAAGAGTACCCACGGCGAGATCATGCTCAACATTACAATGTTCGTGGAACCCTGGCTTTGCCTGTTTTTGAACCTCTAGGGCAGTCATGTATTGGTGTTTTGGAATTGATAATGACTTCACAAAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCTCTTCAGGCAGTAAATTTGAGGAGCTCTGAAGTTTTGGACCACCAGCACACTCAGATTTGTAATGAAGGTCGGCAGAATGCATTAGCTGAGATTTTGGAAATATTGACAGTGGCGTGTGAAATTCATAAGTTACCTCTGGCTCAAACATGGATTCCTTGTAGGCATCGAAGTGTTCTGGCACATGGTGGTGGTCTGAAAAAGAGTTGCTCTAGCTTCGACGGTAGTTGTATGGGACAAGTTTGCATGTCTACAACTGATGCCGCATTATATGTCATAGATGCTCATATGTGGGGTTTCCGCGAAGCCTGTGTTGAGCACCACTTACAACAAGGTCAAGGGGTTGCAGGGAAGGCATTTTTGTGCCGCAACATGTGTTTTTGTGGAAATATTACTGAGTTTTGTAAATTTGAGTACCCTTTAGTACATTATGCTCTTATGTTCGGGTTAACCAGCTGTTTTGCAGTCTGTTTACGAAGCTCTCATACTGAAATTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGAAATCACAGACTTCGATGAGCAAAAGGCAGTGTTGGGATCCATATTAGCAACAATAAATCAGCATTTCCATAGCCTTAAGATTGCTTCTGGTCTAGAACTTAAGGAGGAAGGTTCGGTTGAAATCATTGAAGCAACAAATGGAAGAGTTTATTCAAGGGTTGAAGCTATACAGATTGCCCAATCTACTAAATCACCACCTAGACCTAATGCCTCCCCAAATGTGGACGACATGGTACTGCTAGATTCGTCAGAACTGCAAATAATGATGTACTATGATGACACAAATGGTGGAGGTAATCTTGTCATAATTCTGAAAGATGCTGCAAAGAGCCTCGGTGTTTGCCCAACTACTATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGTGTGTTATCGAGTCTGTCCATGGTGCTGAAGAAGCATTTGCTTTGAATTCTCTCAGCACAAGTCAACTTACCACTGTCGTTGTTCCGTTTCCCGAGCCTTCTACTTCAAACAAGTTTAGCCCGCAAGCCTCATTAGGAATTAGGCAGTCAGAACCTCAGATGAAAGAGGATACTGACTTGGATGCTTCTAAAGTACTAGAAACAAACAGACATGTTGGGCTGGGAGATTACTTGCAGGAAGGAAAGATACTAGGTCCTAAGAAAGTAATTCGTGATAAAGGTGGGTCCACTCAAGAGCTTGGTAAAGTCTCAATTGGCTCTAAAACTGGGAGTGGACCAAGTAAAGATCGTGCAAATCATACCTATCATGGCTCATGCAATGATGGCCCATCAAATGAAATTTTTTCACTTGCAAAACATATATTTATTACACCCAACATTGAGCAATGTGTTGTGGCCACAGAAACCACACCTGACCCTGTGGTCACAGAACCTCGAGAGCCATTTGTGGGGATGCTAATTGAAGATGCTGGAAGTTCCAAAGATTTAAGAAATTTGTGTCCCTCAGTAGCAGATGCCATGTTGGAGGATCAAGTTCCAGAAGCTTGTGAGAGTAATCCTCACAGGCAATGCATAAATACAATTTGTAACATAGCGATGCCTTTTGCTTCTCCGAAAGAAAGGAAAAGTGTGACTATAAAGGCCACATACAGAGAAGACATCATAAGGTTTCGGATCTCTTTGCCCTATGGTATTGTGGAATTAAAAGATGAAGTTGCTAAAAGATTGAAACTAGAGGTGGGTACGTTTGATATCAAGTACCTGGATGATGACCATGAGTGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTAAAATATCGTCAGGCAGAAACATAATAAGGGTTTCAGTCTATGACATAACATCCAATCTCGGAAGTTCATGTGAAAGCTCAGGGGAGTGA 2709 0.4282 MDFNLDTESSWPLDQISFFSNPASPFVISTSSEGPFSPLWASSDVDEDTQARTAASAFSDCHQYFSCNSSSINRKPKENDENEKLSAPFVALPPLENPNRYCLIKERMTQALRNFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLTYAFSVDAESDGILGLPSQVFQKMLPEWTPNVQYYSNKEYPRRDHAQHYNVRGTLALPVFEPLGQSCIGVLELIMTSQKINYAPEVDKVCKALQAVNLRSSEVLDHQHTQICNEGRQNALAEILEILTVACEIHKLPLAQTWIPCRHRSVLAHGGGLKKSCSSFDGSCMGQVCMSTTDAALYVIDAHMWGFREACVEHHLQQGQGVAGKAFLCRNMCFCGNITEFCKFEYPLVHYALMFGLTSCFAVCLRSSHTEIDDYVLEFFLPPEITDFDEQKAVLGSILATINQHFHSLKIASGLELKEEGSVEIIEATNGRVYSRVEAIQIAQSTKSPPRPNASPNVDDMVLLDSSELQIMMYYDDTNGGGNLVIILKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVHGAEEAFALNSLSTSQLTTVVVPFPEPSTSNKFSPQASLGIRQSEPQMKEDTDLDASKVLETNRHVGLGDYLQEGKILGPKKVIRDKGGSTQELGKVSIGSKTGSGPSKDRANHTYHGSCNDGPSNEIFSLAKHIFITPNIEQCVVATETTPDPVVTEPREPFVGMLIEDAGSSKDLRNLCPSVADAMLEDQVPEACESNPHRQCINTICNIAMPFASPKERKSVTIKATYREDIIRFRISLPYGIVELKDEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVKISSGRNIIRVSVYDITSNLGSSCESSGE 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3550 902 Pfam RWP-RK domain 535 569 IPR003035 -
Bisa03g3550 902 PANTHER PROTEIN NLP8 31 901 IPR045012 GO:0003700
Bisa03g3550 902 SMART PB1_new 807 889 IPR000270 GO:0005515
Bisa03g3550 902 CDD PB1_NLP 808 888 IPR034891 -
Bisa03g3550 902 Gene3D - 803 888 - -
Bisa03g3550 902 ProSiteProfiles PB1 domain profile. 807 889 IPR000270 GO:0005515
Bisa03g3550 902 Pfam PB1 domain 808 886 IPR000270 GO:0005515
Bisa03g3550 902 ProSiteProfiles RWP-RK domain profile. 501 589 IPR003035 -
Bisa03g3550 902 MobiDBLite consensus disorder prediction 677 695 - -
Bisa03g3550 902 SUPERFAMILY CAD & PB1 domains 804 892 - -
Bisa03g3550 902 MobiDBLite consensus disorder prediction 671 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3550 Bisa-ChrBisa03 72128945 72133705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3550 800 902 NLP Transcription Factor Family AT1G64530 60.377 1.14e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bisa03g3550 PB1 1.5e-15 CL0072