Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3538 ATGGGAAGAGGAAGGGTGGTTCTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTGACGTTCTCGAAACGGAGGAACGGTTTGCTGAAGAAAGCGTACGAGCTTTCTGTGCTGTGCGATGCTGAAGTCGCCCTCATTATCTTTTCCAGCCGAGGCAAGCTTTTCCAGTTCAGCAGCTCTGACATAAACAGAGCCATTGAGCGGTATCGTCAATGTTGCTACGACTCACAGGATAACGACTTAGTTGACCATGAATCACAGAGCTTGGACCAGGAGCTTTCGAAATTAAGAGTAAGACATGAATCCCTTGAGAGGACACAAAGGCATTTGCTAGGAGAAGATCTTGAGCCACTTAGCATGAAAGAATTGCAGAACCTTGAGAAACAACTGGACAGAACGCTCACACAAACACGAAACTGCAAGACGCAGAAAATGATGGAACGATTGGATGAGTTACACCAAAAGGTAATGATTCAGACCTTTCTATGTTAA 492 0.4512 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQFSSSDINRAIERYRQCCYDSQDNDLVDHESQSLDQELSKLRVRHESLERTQRHLLGEDLEPLSMKELQNLEKQLDRTLTQTRNCKTQKMMERLDELHQKVMIQTFLC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3538 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 FunFam MADS-box transcription factor 1 13 87 - -
Bisa03g3538 163 ProSiteProfiles K-box domain profile. 86 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g3538 163 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa03g3538 163 Pfam K-box region 83 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g3538 163 Coils Coil 123 143 - -
Bisa03g3538 163 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 143 - -
Bisa03g3538 163 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Bisa03g3538 163 Coils Coil 86 106 - -
Bisa03g3538 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa03g3538 163 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3538 Bisa-ChrBisa03 71630186 71657103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3538 1 155 MADS-box Gene Family AT2G45650 63.871 7.14e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa03g3538 K-box 6.4e-20 No_clan