Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3457 ATGTGGATCGATCCAATATGGTGTGAGACCAGTTTGAGTGAGACCAGTTTGACGTTCATATCCGTCTGTATTATGTTACAAGGTGAAGTATCAAAGAAGGAATCACTTATGGAGGAATCCTTTCTTCAGAATCCTTCAGAAATGGTTAGTAATGAAAGAGATGAAATCAAAGGCCACCTAGAAGAACTTGATGATGAAGCTGAGGATGAAGAAGAGGAATCAAGTGAGGAACTAGAAGATGATCCAGAAGAGAATTCTGTTCAAGAAGTGGAGCAGAAGCAGCTAGAAGAAACAACTCTTGACCCAGGACTCTACAAGAAATTGAGGGAAGTGCCATGTTATGAAGTTCCAGATAGCAATCAGTTGTCACTTTATTATTGGAAAGATGACCAGTCTGGAGAACCATTCGAGGATCTATCTGAAGTATCTTTGTTGAAGCAAAGTTCTGGGTGGAATGAACTAGACAAAAACGATGATGGCGGGCTAAATGAAGAAGCGGAACAAAAGCAGCTAAAAGAAACAATTCTGGATCCAGAACTGGATACAAAATTTGGGGAAGCATCAGTTAATGAGGGTCCAGTATGCTCTCCAGAGTCATTTTATAAATACAACCATGGTCAGACTCAAGAATTATTTGATGAGCTATCAGAAGTGTCAGTTTCATTTAAAACTTCTGACCGTGATTGTGGTAAGTGTGACCACAAATCAGGACCAGTCAAACAATCAAATGATAAGAAGAGGTGTCAGGATGTTGCATCTGGTACATCGACTCCAGTGCCATGTTATCAGTCACAGAAGAAGTGCAAACAGGGGGGATCTTTAGGTCCAAAAGCAGAATCAGTGCCTTCGGGTCTGGAGCTCAATAATGACTCTGTGACTGCTGGGGCACCTATTGATAAATCTGCTTCTAAAGAAGGTGGTACGGGAAGTTCTGGAAAACGAAGGCACAACAGATGGGAACAACAGCCTGACGGTGATCAGATAAAAGATTATCAGATTTGCAAAAGGAGGAAAACCAGATGGTCCAGTGATAACACTCAGATAAAAATGATGGGCCCACTTCAGCTGCCCGACATCACAAAAGACTTTCTTGTGGAATATGAGAAGGATCCAGAATTTCAGGGGCTGAAAGCTGAGCTTCTTGAGATTAATAGACAACTGCAAAGACCTCTTAATGATGATAGGCCTGAGGAGGAAAGATCTCCTTCCCCAGAACCAATTTATAATGACCTTGGCATCAGAATAAATACACGGGAAATAAGATTCTGTCAGAAACTTGTGCAGAAACGTCAAAATATCATCTCAAAGTTTATCAAATCAAACCCAACTTTCAAACCTCCATCTGATTACAAGCCTCCAAAGCTCTTCAAAAAACTTTACCTACCAGTGAAACAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGCCCTCGAGGAAACACTCAGAAGAGAATGGAAAATGAAACCGGGGCTAAGATTCTTTTAAGAGGTAAAGGCTTCTCTAAAACACCCAGCAAATCTTCCTCTGGTAAAGAAGATTTACATGTATATATAGAAGCAGACAATAAAAAATCACTGGATGCAGCAGTTGTTATGGTTGAGAAACTGCTGATTCCAATTGAAGGAAGAAATGAGCACAAGAAGGCTCAATTAAAAGAGCTGGCCATGCTGAATGGAACAGTTGATGAAAATTTGTGCAGTTTTAACAGTGATGAGGGACACTGGCCTTATGCCTGCCCTAGCCTTGGATCAACTATCAAAATGAACTCATGTGACACTTGTGGTCTCAACAGTCATTTAAAACTTGCCTGTCCCTCTACACTATCTACACAGAACGATTCTGTGCTCAGTTCTGGATTTGGCTTTAGTCTCAGTTCAACACAGAATAGACAAAAGAGGCCTGAAAAGAAAGCAGTGATGAATAATCTTTATGTTGGTAATCTGCCTCAAGCAATTGATGGTAATAGATTGTGTGAGCTGTTTTCTCCATTTGGTAAGATCACTGAAGCAAAAATTATTAAGGATCGAGCCACTGGAAGCAGTAGAGGTTATGGCTTTGTCAAGTTTGAGAATGCCATGGATGCAGCAGCAGCTGTAATTCATTTGAACGGTTTGAAATTGGATGGGAGGGTTTTGAAAGTAAGCATAGCTGGGCTCCTGTCGCATACTGAATCCCTAGACTTGAACGTGCTCCCAAAGCACTCATGGCTTACTGGCACATCTGAAAATATCCCAAGTCGAACAGATTGCTCTGGTCCATTACATTTTATGCTGCCATCACATCAAACTTCACTTCATGACTGCAGCGGCATGAATATGTTTTCATCCATTATCAACTCACGGTATGGCGGTCTTAAGAAGGATCTAGGCTTTACTCCTCCAAGCTACACCTCAAGCCCATCTGATTTTGGTAATTCTAGTAATATGCATTTCTCATGCAACTTTACAGATCAAAGTTTGTTCTCATCAGGTTTTGGGGAGAATCAGGTCGACCCCAGCTGCCTCGATAAATCTTTTGTATGTTTTCATTACAAAACCTTTGTAGGTAATTGA 2556 0.4085 MWIDPIWCETSLSETSLTFISVCIMLQGEVSKKESLMEESFLQNPSEMVSNERDEIKGHLEELDDEAEDEEEESSEELEDDPEENSVQEVEQKQLEETTLDPGLYKKLREVPCYEVPDSNQLSLYYWKDDQSGEPFEDLSEVSLLKQSSGWNELDKNDDGGLNEEAEQKQLKETILDPELDTKFGEASVNEGPVCSPESFYKYNHGQTQELFDELSEVSVSFKTSDRDCGKCDHKSGPVKQSNDKKRCQDVASGTSTPVPCYQSQKKCKQGGSLGPKAESVPSGLELNNDSVTAGAPIDKSASKEGGTGSSGKRRHNRWEQQPDGDQIKDYQICKRRKTRWSSDNTQIKMMGPLQLPDITKDFLVEYEKDPEFQGLKAELLEINRQLQRPLNDDRPEEERSPSPEPIYNDLGIRINTREIRFCQKLVQKRQNIISKFIKSNPTFKPPSDYKPPKLFKKLYLPVKQYPEYNFVGLIIGPRGNTQKRMENETGAKILLRGKGFSKTPSKSSSGKEDLHVYIEADNKKSLDAAVVMVEKLLIPIEGRNEHKKAQLKELAMLNGTVDENLCSFNSDEGHWPYACPSLGSTIKMNSCDTCGLNSHLKLACPSTLSTQNDSVLSSGFGFSLSSTQNRQKRPEKKAVMNNLYVGNLPQAIDGNRLCELFSPFGKITEAKIIKDRATGSSRGYGFVKFENAMDAAAAVIHLNGLKLDGRVLKVSIAGLLSHTESLDLNVLPKHSWLTGTSENIPSRTDCSGPLHFMLPSHQTSLHDCSGMNMFSSIINSRYGGLKKDLGFTPPSYTSSPSDFGNSSNMHFSCNFTDQSLFSSGFGENQVDPSCLDKSFVCFHYKTFVGN 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3457 851 Gene3D - 613 720 IPR012677 -
Bisa03g3457 851 CDD KH-I_BBP 454 539 - -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 388 404 - -
Bisa03g3457 851 Pfam KH domain 470 535 IPR004088 GO:0003723
Bisa03g3457 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 644 714 IPR000504 GO:0003723
Bisa03g3457 851 SUPERFAMILY RNA-binding domain, RBD 641 718 IPR035979 GO:0003676
Bisa03g3457 851 ProSiteProfiles Type-1 KH domain profile. 470 534 - -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 224 336 - -
Bisa03g3457 851 PANTHER RNA-BINDING PROTEIN RELATED 299 706 IPR045071 -
Bisa03g3457 851 Coils Coil 49 80 - -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 61 86 - -
Bisa03g3457 851 FunFam Sex lethal, isoform D 624 719 - -
Bisa03g3457 851 Gene3D - 368 447 IPR047086 -
Bisa03g3457 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 642 720 IPR000504 GO:0003723
Bisa03g3457 851 Pfam Splicing factor 1 helix-hairpin domain 337 451 IPR032570 -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 42 101 - -
Bisa03g3457 851 SMART rrm1_1 643 716 IPR000504 GO:0003723
Bisa03g3457 851 MobiDBLite consensus disorder prediction 224 247 - -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 309 336 - -
Bisa03g3457 851 Gene3D K Homology domain, type 1 452 566 IPR036612 GO:0003723
Bisa03g3457 851 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 455 562 IPR036612 GO:0003723
Bisa03g3457 851 SMART rrm2_1 643 716 IPR003954 GO:0003676
Bisa03g3457 851 MobiDBLite consensus disorder prediction 87 101 - -
Bisa03g3457 851 SMART kh_6 455 539 IPR004087 GO:0003676
Bisa03g3457 851 MobiDBLite consensus disorder prediction 387 409 - -
Bisa03g3457 851 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3457 Bisa-ChrBisa03 68188485 68191972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3457 642 718 Eukaryotic Initiation Factors Gene Family AT4G34110 41.558 2.15e-10 62.4