Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3456 ATGATCCGAACCACACAATCCAACTTCAGTCTTCTCAAATGGGCTCAGCTACTCCTCGCCCTCATTGTAACCTGCGTGAACCTACGCGCCGCCGCACAATCTGCAGTACAACCAGTGCCTTCCTTTGCTTCGCACCAGAATTGGGATCCTTCAATTGCAGCCATGGTAGGAGCCCTCTTCTGTGCGCTCATATTCATGGGCTTCTTCTCCTTCTACCTCCGCCATTGCTCCGACTTATACATCAACACTGGCCAGAACCAAATCGGCGCCGCCTCAGGAGATTGGTCCTGCTCCTGTTCTCAGGGCATCGACCCCCAAGTCCTCGACACCTTTCCGATCCTCGTCTATTCGACCATCAAAGACCTCAAGATCCGCAAAGGAGCGCTTGAATGTGCAGTATGCTTGAGCGAGTTCAAAGAAAACGATACCCTCCGTTTGCTTCCGAAATGCAACCACGTCTTCCATCCATGTTGTATCGACGCCTGGTTATCTTCCCACGTGACCTGTCCAGTGTGTCGAGAAAAACTAAACCCAAATTTTGCTGAAGCAGCCTTGACCGTTCCGACCCAGTTGAACTCTAACGAAATGAATGAGGAAAGTTCTATTCCAAGAGACGAACATGGCGATACAGAGGAAAATCAAAATCCTAATGTGAATGATGGTGATAAGAGAAGTATGAATTATGGGGAGAATGTTAGTGTGACCGTGGATGAAGCTAGAGGGATGCAAAATCCTGCACTGAAATCGGGCAGATTCGGAGAGCTAACGAGGTCGAACTCGACTGGTCATTGTGAGGTTGAAGGAGGAGGGAAGAACAGGGAGAGGTATACGCTGAGTTTGCCGGAGGATGTTCGGAGGTATATTCTGCTGAACCACGGGACTATCACCATGCGGCGTTCTGCGAGCTACAACGTGATAATGCCCTTCAGCGGGAGTTCCAGGAAAGGGTTGTGTGGGAACGAGAGAGAAGGAATGACGAGAGATAATAAAAATGCCGAGCTGTGGGTGGTGTCTAGGACTCCGCCATTTGTTTCTCGCCATGCTTTCGGGAAATTCGTCTGCAACTGTAAGGAACAACAAAACCAATACACCTGA 1095 0.4959 MIRTTQSNFSLLKWAQLLLALIVTCVNLRAAAQSAVQPVPSFASHQNWDPSIAAMVGALFCALIFMGFFSFYLRHCSDLYINTGQNQIGAASGDWSCSCSQGIDPQVLDTFPILVYSTIKDLKIRKGALECAVCLSEFKENDTLRLLPKCNHVFHPCCIDAWLSSHVTCPVCREKLNPNFAEAALTVPTQLNSNEMNEESSIPRDEHGDTEENQNPNVNDGDKRSMNYGENVSVTVDEARGMQNPALKSGRFGELTRSNSTGHCEVEGGGKNRERYTLSLPEDVRRYILLNHGTITMRRSASYNVIMPFSGSSRKGLCGNEREGMTRDNKNAELWVVSRTPPFVSRHAFGKFVCNCKEQQNQYT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3456 364 CDD RING-H2_EL5-like 130 173 - -
Bisa03g3456 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 180 IPR013083 -
Bisa03g3456 364 Pfam Ring finger domain 130 173 IPR001841 -
Bisa03g3456 364 SUPERFAMILY RING/U-box 130 179 - -
Bisa03g3456 364 PANTHER RING FINGER DOMAIN-CONTAINING 41 176 - -
Bisa03g3456 364 FunFam E3 ubiquitin-protein ligase ATL6 94 179 - -
Bisa03g3456 364 MobiDBLite consensus disorder prediction 187 270 - -
Bisa03g3456 364 MobiDBLite consensus disorder prediction 199 218 - -
Bisa03g3456 364 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Bisa03g3456 364 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3456 Bisa-ChrBisa03 68169455 68170549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3456 17 346 Rapid Response to Elicitors AT3G05200 38.138 4.68e-58 191