Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3448 ATGGGGAGGGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTCACATTCGCAAAGAGAAGAAATGGACTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCAGAAGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGTTCCTCTAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGTTACGGTGCGGTGGAAGTCAGCAAACCAGCCAAAGAGCTTGAGACCAGCTATCGCGAGTACTTGAAGCTGAAAGCAAGGATGGAATCTCTTCAGAGGACACAAAGAAACCTGCTAGGAGAAGACTTGGGTCCATTGAACTCCAAGGAACTTGAGCAGCTTGAGCGTCAACTGGATTCGTCTCTAAAGCAAGTTAGGTCCACCAAGACCCAATTCATGCTGGACCAGCTTGGTGATCTTCAAAACAAGGAGCATATGCTGGTTGATGCAAACAGAGCTTTGACTATGAAGCTGGAAGAAATCAATTCAAGAAACCACTATAGGCAGTCATGGGAAGCTGGTGATCAAAGCTTGCCATATGATCCCCAGAATGCAAACTCTCAGGGCTTCTTCCAGCCTTTGGAATGTAATCCCACACTGCAGATAGGTCCTGATTACAGTTACACTCCAGAGGCTTCAGATCAGATGACTGCTACAACCCAAGCTCAGCAAGTGAATGGATTTATTCCTGGATGGATGCTTTGA 744 0.461 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELETSYREYLKLKARMESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLGDLQNKEHMLVDANRALTMKLEEINSRNHYRQSWEAGDQSLPYDPQNANSQGFFQPLECNPTLQIGPDYSYTPEASDQMTATTQAQQVNGFIPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3448 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bisa03g3448 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g3448 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 Coils Coil 124 144 - -
Bisa03g3448 247 FunFam MADS-box transcription factor 1 13 87 - -
Bisa03g3448 247 Coils Coil 87 114 - -
Bisa03g3448 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g3448 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bisa03g3448 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Bisa03g3448 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa03g3448 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3448 Bisa-ChrBisa03 67964014 67971710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3448 1 247 MADS-box Gene Family AT5G15800 73.664 1.35e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa03g3448 K-box 3.3e-27 No_clan