Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa03g3326 | ATGGTTGTGTACGGAAGAGATCTTGCTAACTACGGGAATGCCGACCGTGATATTGAGCAGGCATTAATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCTAATGATGAATCATCTTTAGTCTGGATATCAAGTAGTGGGGAGAGGAGTTTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTTCAACGTTATCTGCGTCCTGAGAAGGATTATTTGTCTTTCTCACTTATTTATAACAACGGAAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTCGAGGCAGAAGTGTGGATCGCTGGCCTGAAATCACTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATCGATGGATGGAGTGATGGGGGCCTCTATCTTGATGATAATAGAGACTTGAGTTCAAATCGTCCAAGTGGAAGCTCAGTTAGTACTTCACAAGATATTAGCTCTCCTGAAGTTTCTGTGAGTCTTAATTCAAATTCTTCTCCAAAGTCCTTCCGGCCTGAGAACACTGCTAATTCTGAAAGGTCACATGCACCATCAGACCCAACAAATATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGTACATCCAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTTGGGGATGTATACATATGGGGAGAGGTAATATGTGATAACATTGTGAAAATTGGTGCTGATAAAAATGCCAATTATTTTAGCCCAAGGGCAGATGTGCTTCTCCCTAGACCACTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGGGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTTTAATTGAAGCATTGGCTTCTACAATTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCCGGGGAACTTTATACTTGGGGTGATGGTACTCATAATGCTGGTCTACTTGGTCATGGTACTGATATTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTTGAGGGACTTCAGGTTTCTTTAGTTACTTGTGGTCCATGGCACACAGCATTGGTAACTTCGAGTGGGCAGCTTTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGGGATAGGGAAAATGTTTTTTATCCTAGAGAAGTAGAATCCCTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTAGAAGTTATTGTAACACAATCCAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGCGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCCCGTCTTGAACCAACTTGTATCCCTTCGCTTATTGATCACAATTTCTATAAAATTGCTTGTGGGCACAGTTTGACAGTTGGACTGACAACATCAGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAACTTGGGAATCCCCACTCTGATGGAAAGCTGCCTTGCTTGGTTGAAGACAAACTTGCGGGAGAAACCGTTGAAGAAATTGCCTGTGGTGCATATCATGTTGCAGTTTTAACGTCCAAAAATGAAGTTTATACATGGGGGAAGGGTGCAAATGGAAGGTTGGGTCATGGAGATGTTGAAGATAGGAAAATACCAACTTTGGTTGAAGCTTTGAAGGATAGACATGTAAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCAGGTGCTGAGCAATCTCAGTGCTCTGCATGCAGACAAGCATTTGGTTTCACTAGGAAGAGGCATAATTGTTATAATTGTGGACTTGTACACTGCCATTCATGTAGTTCAAGGAAAGCCTTAAGAGCAGCTCTGTCTCCTAACCCTGGCAAACCATATCGTGTTTGTGATTCTTGTTATGCAAAACTGAATAAGGTAGCTGAAGCAGGCAGTAATAATAGGAGGAATGCTCTGCCACGTTTGTCAGGGGAAAACAAGGATAGGTTAGACAAGTCTGAGATAAGAGCATCAAAGGTTGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAAGCAGCCAAGCAAGGCAAGAAGGCTGATACATTTGCCCTAGTTCGCACCTCGCAAGCACCTTCATTGCTGCAGCTGAAAGATGTTGTCTTGTCAACTGCTGTTGATTTGAGACGAGCAGCTCCAAGACCAGTTCTTACATCATCTGGAGTTAGCTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGTCCCCCCCGTTCTGCTACACCGATTCCAACAACATCTGGACTTTCCTTCTCAAAAAGTATTACTGATAGTTTGAAGAAAACAAATGAACTTTTAAACCAAGAAGTGCTGAAGCTACGTGGTCAGGTTGAGAGCCTGAGACAGAGATGTGAACGGCAAGAATTAGAGCTTCAAAGGTCAGCAAAGAAAACCCAGGAAGCTATGGCGCAGGCTGCCGAGGAGTCTGCTAAATCTAAAGCAGCAAAAGAAGTTATAAAGTCACTGACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCCCCTCGAGCTAATGATACTGAGAACACCCGACAAGCTTACCTGCCAAATGGTTTGGAGTCAAATGGCATCCACTATTCAAACTCAAATGGGGAGCGCCACTCCGGAGCAGAGTCAATTAGTGGCTCTAGCTTGGCTTCTTTGGGGCTTGAATCATCTCTCTTGAATAGAATTGAGGGGAATCTATCTGGAACCCATGGATCTAATCTTTACCAGCAAAACCGGCAGCTCATGACCTCCAATGGGACAGATGAAAACCCAGATGTTAAATTGCCAAATGGTGGGCTGACTCACACAAGTAGCCATAGCATGTCAGATACTGTTGATGGCAGGGAGTCTGGGCCATTACAAGATGGTGAGAGTGGTTTAAGATCAAGAGATGCTGTACTGGCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTCATGGCCTTGCGGGATGGAACACGAGATCTTAAGCGAGTGCGCTTCAGCCGGAGACGATTTGGGGAGCATCAAGCAGAGACATGGTGGTCGGAGAACCGTGAAAACGTATATGAAAGGTACAATGTTCGTAACACTGAAAAATCTTCTGGCCAAGCAACTCGTAAGGTAGAAGGTGCGGCTTCACCTGTTTCCCAATCTTAG | 3375 | 0.4403 | MVVYGRDLANYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLVWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKSLISSGQGGRSKIDGWSDGGLYLDDNRDLSSNRPSGSSVSTSQDISSPEVSVSLNSNSSPKSFRPENTANSERSHAPSDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICDNIVKIGADKNANYFSPRADVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLIEALASTIVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVSLVTCGPWHTALVTSSGQLFTFGDGTFGVLGHGDRENVFYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCIPSLIDHNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPHSDGKLPCLVEDKLAGETVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALSPNPGKPYRVCDSCYAKLNKVAEAGSNNRRNALPRLSGENKDRLDKSEIRASKVVPSNMDLIKQLDSKAAKQGKKADTFALVRTSQAPSLLQLKDVVLSTAVDLRRAAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVESLRQRCERQELELQRSAKKTQEAMAQAAEESAKSKAAKEVIKSLTAQLKDLAERLPPRANDTENTRQAYLPNGLESNGIHYSNSNGERHSGAESISGSSLASLGLESSLLNRIEGNLSGTHGSNLYQQNRQLMTSNGTDENPDVKLPNGGLTHTSSHSMSDTVDGRESGPLQDGESGLRSRDAVLAANSNQVEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAETWWSENRENVYERYNVRNTEKSSGQATRKVEGAASPVSQS | 1124 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa03g3326 | 1124 | Gene3D | - | 175 | 461 | IPR009091 | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 303 | 354 | IPR000408 | - | |
| Bisa03g3326 | 1124 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 212 | 462 | - | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 514 | 532 | IPR000408 | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 305 | 321 | IPR000408 | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 355 | 371 | IPR000408 | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 412 | 426 | IPR000408 | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 572 | 593 | IPR000408 | - | |
| Bisa03g3326 | 1124 | PRINTS | Chromosome condensation regulator RCC1 signature | 396 | 412 | IPR000408 | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 711 | 726 | - | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 705 | 726 | - | - | |
| Bisa03g3326 | 1124 | CDD | PH_PLC_plant-like | 16 | 128 | - | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 633 | 695 | IPR017455 | - | |
| Bisa03g3326 | 1124 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 396 | 406 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Coils | Coil | 884 | 904 | - | - | |
| Bisa03g3326 | 1124 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 62 | 903 | - | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 355 | 409 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Gene3D | - | 462 | 634 | IPR009091 | - | |
| Bisa03g3326 | 1124 | CDD | FYVE_like_SF | 638 | 691 | - | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 787 | 823 | - | - | |
| Bisa03g3326 | 1124 | Pfam | FYVE zinc finger | 629 | 695 | IPR000306 | GO:0046872 | |
| Bisa03g3326 | 1124 | Pfam | Transcription factor BRX N-terminal domain | 879 | 914 | IPR027988 | - | |
| Bisa03g3326 | 1124 | Coils | Coil | 835 | 880 | - | - | |
| Bisa03g3326 | 1124 | SMART | fyve_4 | 627 | 696 | IPR000306 | GO:0046872 | |
| Bisa03g3326 | 1124 | SUPERFAMILY | PH domain-like | 17 | 127 | - | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 525 | 576 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 409 | 458 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 578 | 625 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 355 | 405 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 524 | 573 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 472 | 519 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 303 | 351 | IPR000408 | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 789 | 806 | - | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 1101 | 1124 | - | - | |
| Bisa03g3326 | 1124 | Gene3D | - | 17 | 133 | IPR011993 | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 410 | 461 | IPR000408 | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | BRX domain profile. | 1044 | 1099 | IPR013591 | - | |
| Bisa03g3326 | 1124 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 448 | 458 | IPR000408 | - | |
| Bisa03g3326 | 1124 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 635 | 703 | - | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 983 | 1015 | - | - | |
| Bisa03g3326 | 1124 | SUPERFAMILY | RCC1/BLIP-II | 240 | 630 | IPR009091 | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 577 | 628 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 635 | 705 | IPR013083 | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 983 | 1028 | - | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 151 | 234 | - | - | |
| Bisa03g3326 | 1124 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 289 | 299 | IPR000408 | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 152 | 233 | - | - | |
| Bisa03g3326 | 1124 | SUPERFAMILY | FYVE/PHD zinc finger | 629 | 700 | IPR011011 | - | |
| Bisa03g3326 | 1124 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 473 | 524 | IPR000408 | - | |
| Bisa03g3326 | 1124 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1043 | 1098 | IPR013591 | - | |
| Bisa03g3326 | 1124 | Pfam | Pleckstrin homology domain | 19 | 127 | IPR001849 | - | |
| Bisa03g3326 | 1124 | MobiDBLite | consensus disorder prediction | 919 | 945 | - | - | |
| Bisa03g3326 | 1124 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 463 | 634 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa03g3326 | Bisa-ChrBisa03 | 60962123 | 60970183 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa03g3326 | 1045 | 1109 | Major Intrinsic Protein MIP | AT1G31880 | 47.692 | 3.74e-13 | 70.5 |