Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3323 ATGATGGCGAGGGAGAAGCTATACGTCACCGTTCCGAGCCTCTTCCGATGCCCAATCTCGATGGACATAATGACGTCTCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCTCCAGCATCCAGAGCTGGCTTGAATCCGGGCACGACACATGTCCGGCCACAATGCAGGTCCTCGCCTCCAAAGACATAATCCCCAACCTCACCCTTCACCGCATCATCCAAAATCTCAATCTCTCCCCCTCCGACTTGCCTCCTCCCAAAATCTCAACCGAACAAATCACGACTCTGGTCCACAGAATTCAAGCCGAGAATGTCGACGATGTCAGTGTTCCGCTTTCGAAGATTCTGGAATTCCTCGGCCACTCGGACGAGAATCGGCTTTTCTTGTCGAGTTTCGCCGGGTTCGACTCGGCAATTGTTCGTGTTCTCAGCAGAAATTGTTCTCAGACTGAGGTCTCAGAAATGGCGATCAGAGTTTTGAGCTCGATTATTCGAGAAAATGGAGTTAAAGAACGAATTCGCCGGTTCATTTTCGATGCCAATCGAGATTGCTTATCTTCGATTGTCGCAGTCTTGCAATATGGAAACTCTCTGGCCTCGAAGATCGAATCGATAACAGTCTTGGAATCGCTCGCCGGAGACGTTCAATCGAAACGGTCAATCTCCGAAACGCAAGGCCTTTTGTCAGTACTCGTCAACCTACTCCGCGCAGAAAACGACTGCAGTTCCACCTCATCAGAACTGCAAGACGCCGTTTTGTCGTGCTTGATAGCTGTTTCAGCAACTCAGTCAATCAAAACCGAACTCGTCCGGTTCGGTCTCGTTCAGATTCTCACCAAATTGCTCCATAACACGGCCTCTAGAAATTCTAGTTCAACGGGCGAGAGGTCCCTGAGATTAGTGGCCGTACTTTCGACGTATGCGGACGGAAGGTACGCTATTGCCGAAGAGCCGAGGTGTGTGGAGGCGGTGGCGGAGAAGCTAGTGAAGGCGTCGAAGGCGGCGACGGAGGATGCGGTGGCGATCCTGTGGGGTATCTGCTGCGTTTGTAAGAATGGGAAGGTGCAGGAAAAGGTGGTGAAGTGCAATGGCGTGACGAAGATACTGCTGGTGCTGCAGAGAGATTGCGAGGAGCATGTGAAGAGGATGTGTGGGGATTTGGTTAAGGTTCTTAGGGCTGTGTCCAAGGATGGGTTGGGTAGCTATGAGACGAAAACCACTCATATCAAACCTTGCTAG 1242 0.5153 MMAREKLYVTVPSLFRCPISMDIMTSPVSLCTGVTYDRSSIQSWLESGHDTCPATMQVLASKDIIPNLTLHRIIQNLNLSPSDLPPPKISTEQITTLVHRIQAENVDDVSVPLSKILEFLGHSDENRLFLSSFAGFDSAIVRVLSRNCSQTEVSEMAIRVLSSIIRENGVKERIRRFIFDANRDCLSSIVAVLQYGNSLASKIESITVLESLAGDVQSKRSISETQGLLSVLVNLLRAENDCSSTSSELQDAVLSCLIAVSATQSIKTELVRFGLVQILTKLLHNTASRNSSSTGERSLRLVAVLSTYADGRYAIAEEPRCVEAVAEKLVKASKAATEDAVAILWGICCVCKNGKVQEKVVKCNGVTKILLVLQRDCEEHVKRMCGDLVKVLRAVSKDGLGSYETKTTHIKPC 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3323 413 FunFam RING-type E3 ubiquitin transferase 11 82 - -
Bisa03g3323 413 Gene3D - 86 400 IPR011989 -
Bisa03g3323 413 SUPERFAMILY ARM repeat 183 393 IPR016024 -
Bisa03g3323 413 CDD RING-Ubox_PUB 12 63 IPR045210 -
Bisa03g3323 413 SUPERFAMILY RING/U-box 7 77 - -
Bisa03g3323 413 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Bisa03g3323 413 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Bisa03g3323 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 80 IPR013083 -
Bisa03g3323 413 PANTHER WDSAM1 PROTEIN 10 397 IPR045185 GO:0061630
Bisa03g3323 413 Pfam U-box domain 11 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3323 Bisa-ChrBisa03 60743152 60744393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3323 8 412 U-box Gene Family AT3G18710 40.995 3.39e-92 282