Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3295 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGAAGCTTTGAGGTAAGGCTTCCAGGTCATCATAGAGGGAAGTCGCATAGCTCAGTGCACGAGTTGCAGGAACCGCCTCCAGTTATACAGAACAGCCGTTGGGCCAGCCTTCCACCTGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAGCGAGTGAGAGTACATGGCCTGCTCGTAAACATGTAGTTGCTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAGTTCTGTGGGAAGATCACTTTCCCTGTTTCACTAAAACAGCCTGGATATCGGGACGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCGCCTTTTCCTTTGCCTTAGTCCTGCGTTGCTTGTTGAAAATGGGAAGTTTCTTTTATCTGCAAAAAGGACTAGAAGAACCACATGCACAGAGTATATCATATCAATGGATGCAGATAACATATCAAGATCTAGTAGTACATATATTGGAAAACTGAGATCAAATTTTCTTGGAACCAAATTTATAATTTGTGATACACAGCCTCCCTACAATAACTCTCAGCTGTCTCCACCGGGGAGAAGCCGGAGGTTCTATTCAAAAAAGGTTTCTCCAAAGGTTCCTAGTGGCAGCTACAATATCGCTCAAGTCACCTATGAGCTAAATGTTCTCGGTACTAGAGGACCACGCAGGATGCACTGCACCATGTACTCAATCCCTTCATATTCTCTTGGGCCGGGTGGCACTGTCCCAGGTCAACCTGAGCTCCTTCCACGCTCCCTTGAGGACTCATTCCGGAGTATTTCCTTCTCAAAATCGATTGACAATTCAACTGAGTTTAGCAGCTCAAGGTTCTCAGACATAGTTGGTACCAGCAATGAAGATGAGGAAGGAAAACAGAGACCTTTAGTTCTTAAAAACAAGGCTCCAAGATGGCACGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGGAGGGTGACTGTTGCCTCTGTCAAAAATTTCCAGTTGATTGCTGCAACGCAGCCTGTGGCTGGTGCTCCAACACCAGCGCAGCCATCGCAGTCTGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTTGGAAAGGACATGTTCACAATGGATTATCGATATCCCCTATCCGCATTTCAGGCTTTTGCCATCTGCTTGACTAGCTTTGACACAGAATTGGCTTGTGAATAG 1275 0.458 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSHSSVHELQEPPPVIQNSRWASLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGYRDGTIQCFIKRDKSNLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIICDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPSYSLGPGGTVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIVGTSNEDEEGKQRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPVAGAPTPAQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTELACE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3295 424 FunFam Tubby-like F-box protein 48 101 - -
Bisa03g3295 424 PANTHER TUBBY-RELATED 41 422 - -
Bisa03g3295 424 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bisa03g3295 424 FunFam Tubby-like F-box protein 110 424 - -
Bisa03g3295 424 Gene3D - 48 101 - -
Bisa03g3295 424 Gene3D Tubby Protein; Chain A 112 418 IPR025659 -
Bisa03g3295 424 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Bisa03g3295 424 CDD F-box_AtTLP-like 53 97 - -
Bisa03g3295 424 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Bisa03g3295 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Bisa03g3295 424 Pfam Tub family 114 419 IPR000007 -
Bisa03g3295 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Bisa03g3295 424 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3295 Bisa-ChrBisa03 59339095 59341510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3295 1 424 TUB Transcription Factor Family AT1G76900 69.717 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa03g3295 Tub 6e-114 CL0395