Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3218 ATGGCGGGAGCTACAGGAAGAGTCCTCCTCACTCTCTCTCTGGCCTCCAACCTCTCTGCATTCGCACGCCTATCTCATGGCCATCGCATTCCGTTTCTCAAATTCTCAGCAAAGCCCAATAGGGTTTTACCAGGGTTTAGGCCACTCTGCACTATCCCCCCCGCCACCGCCACTGACACTATGGACACGACGGAAACCATCAACCCAGACCAAATCAGGCACTCAATTCTGCTTGGGAGACTTAGAGTCAGGCACCTTAAGGACTCGACTAAAACCCCAGAGGCTAAGAATACGACAAAACCAGTTGCTTCCTCTGAGAATGGTCGGGAGAATGAGCTGAAGAGATCAGAGAAGAAGAAGAAGTTGGTTGGCAGTTTTGAGGAGCTGGGTCTCAGCGAGGAGGTAATGGGAGCCGTGAGGGAGATGGGTATTGAGGTTCCCACTGAGATTCAGTGTATCGGCATCCCTGCTGTCTTGGAAGAGAAGAGTGTCGTTTTGGGATCTCACACTGGGTCCGGCAAGACACTTGCTTACATGCTTCCAATTGTTCAGTTGCTCAGACGGGATGAACAATTGAATGGATTACTTATGAAGCCCAGGCGTCCCCGAGCTGTTGTGCTATGTCCTACGAGGGAGTTGTCTGAGCAGGTGTTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGATTCAGGTGTACAATGGTAAGTGGTGGTGGCCGTATCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACATGGTAGTTGGTACCCCTGGAAGAATTCTTCAACACATTGAAGAGGGTAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGCTTTGGTCCTGATATACGCAAGTTTCTTGGCCCGCTGAAGCATCGTGCATCAAAACCAGATGGCCTATGTTTTCAGACCATCTTGGTTACTGCAACAATGACACAGGCAGTGCAAAAGTTGATTGATGAGGAGTTTCAAGGCATTGTGCATCTGCGCACATCGACACTGCATAAAAAGATTGCATCTGCTCGTCATGATTTTATTAAGCTTTCAGGTTCTGAAAACAAGCTGGAAGCATTACTACAGGTTCTTGAGCCAAGCCTGGCAAAGGGGAATAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGCCGTGCTGTGGATCATTTTCTTAGTGAAAATCAGATATCCACTGTCAATTACCATGGAGAGGTACCAGCTGAGCGGAGGGTTGAAAACCTTAAGAAGTTTAAGAGTGATGATGAAGACTGCCCTACTTTGGTTTGCACAGACTTGGCTGCTAGGGGTCTGGACCTTGATGTTGATCATGTTATCATGTTTGATTTCCCCTTGAATTCTATTGACTACCTTCACCGCACTGGTAGAACAGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGCTTGGTCGCTAAAAAGGACTCGGTTCTGGCCACTCGAATTGAGGAAGCAATAAAGAAGAATGAGAGCTTAGAATCTCTCACCAAAGATAGCGTCCGGAGGGACATTGCCAGGGCTCAAATAACTCAGCAGAAGGGGAAGAGTACAAAATTGGTTAAAGTTTCCAAACCAAAAAACAGTTCCGGTGTCCGTGCCACCTCTAGAAAAGGATCAAAAGTATCAAAAAACACTTCTGGTATTGCTGCTGCTTCCAGAAAAGTATCGAAACCATCAAAATCTGTTAAGACAGGAATTCAGGTAAAAAAATCTGCAAAATCTTCCAGTGCAAGTAGCTCTAGAAAAAAATCATCAGGGATGAAGCAAACAAGTAAAAAGGCCAGTGCTGGCAAATCCACAAATTCTAAACTGAGTGTTGTAGGTTTTAGGGGAAGGAGTTCATCCTCAAGTAAGAAAGAATCAAATTTTTGA 1920 0.4547 MAGATGRVLLTLSLASNLSAFARLSHGHRIPFLKFSAKPNRVLPGFRPLCTIPPATATDTMDTTETINPDQIRHSILLGRLRVRHLKDSTKTPEAKNTTKPVASSENGRENELKRSEKKKKLVGSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPIVQLLRRDEQLNGLLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRASKPDGLCFQTILVTATMTQAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAERRVENLKKFKSDDEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDSVLATRIEEAIKKNESLESLTKDSVRRDIARAQITQQKGKSTKLVKVSKPKNSSGVRATSRKGSKVSKNTSGIAAASRKVSKPSKSVKTGIQVKKSAKSSSASSSRKKSSGMKQTSKKASAGKSTNSKLSVVGFRGRSSSSSKKESNF 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3218 639 SMART helicmild6 396 478 IPR001650 -
Bisa03g3218 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 489 IPR027417 -
Bisa03g3218 639 Gene3D - 353 520 IPR027417 -
Bisa03g3218 639 Pfam DEAD/DEAH box helicase 148 331 IPR011545 GO:0003676|GO:0005524
Bisa03g3218 639 CDD DEADc 135 334 - -
Bisa03g3218 639 MobiDBLite consensus disorder prediction 527 639 - -
Bisa03g3218 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 517 IPR001650 -
Bisa03g3218 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 342 IPR014001 -
Bisa03g3218 639 SMART ultradead3 143 362 IPR014001 -
Bisa03g3218 639 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Bisa03g3218 639 MobiDBLite consensus disorder prediction 87 118 - -
Bisa03g3218 639 Gene3D - 86 343 IPR027417 -
Bisa03g3218 639 CDD SF2_C_DEAD 355 487 - -
Bisa03g3218 639 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 63 515 - -
Bisa03g3218 639 Pfam Helicase conserved C-terminal domain 367 478 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3218 Bisa-ChrBisa03 56651716 56663176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3218 123 500 Eukaryotic Initiation Factors Gene Family AT3G19760 28.721 1.16e-40 151