Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3210 ATGGCCACTTCCCAGCATCGTTGTGTTTTTGTTGGGAATATACCGTACGATGCCTCTGAGGAACAGCTTATTGAAATTTGCCAGGAGGTTGGGCCTGTTGTGTCATTCAGATTAGTTATTGATAGAGAAACTGGAAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGATGAAGAGACAGCTCTAAGTGCTCGTCGTAACCTTCAGGGTTATGAGATCAATGGGCGACAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGTTCTGATAGAAATAGAGAACAGGGGCGTGGTGGGCCTGGATTGGCAGCAAATGTTGACCCTCAGAAACAAGCAGGTGGGCCACTTGTCCATGGTGAAGCTGTTCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCGAATGCCATGGCGACAACTCTAGGAGGTGCTCAGTCTGGCATCCAATCAAATCAAAATGGTTTGCAGGTCCAGTTAGGATTGGCACATGACCCTTTAACACTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGAATGAGATTATCTCTGAGCTCAAGGCAATGGCTACACAGAACAAGGAATTAGCATGTCAGTTGTTACTTTCTAGACCACAGTTGCCTAAGGCTCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAGTGCTACAAATGCAGAACCTTAGGCAGGTTTCAGGTCAAACCTCCCAACCTCCAGTGGATGAAGGCCAGCTAGGTCAGCCCGCAATGTTTCAACCTTTATCTGGGGTACCTCCTCACGCACAGATCAAATCGCAGCCTGGTTTGGTGCCGAATATTCAAGAAGCTCAAGTCAGCACCGTACGTCATAATCCTCTGGTTCCTAAAATAACTGCACACCCAAAGCCACCTTTGCAGCCTCGGATGCAGCTTCCACAACATCCAAGCAACCCTGTTGTACCGCTAGGCACATTGCCAGGGCATTCAACAGTTCCTTCTGTGCGCCTCCCATCTTTGGGCAGTTTGTCTATTAGACCACCAATTCATCTGGCAACTTCAACTTCTCTGAACCAGCAAATGCATGCCCCTTTACTACATCATTCAGGACAGGTTGGTAGCTCAGGTGTAGGACAAAATATTCGGATGGTACATCCAGAAGCAAGCTTTCAGCCTGGCCCATCTGGATCATCAGGTATTTCTCAGTCAATTAATAGGGAAGTTGACAGATCAGCTCTTGAGGATTCCATTTGGGCCAAGAACAGTACTACATATTCAAATATTCCTCTTGGATCTGGAGAGAAAACAAATGTGGTTCATGAGTCTTCAGAACAGTTTAGTCGCCCTTCAAAGCTGATCAAATTTGATGATAGAAGAAGCACCTCTTTCTCTGCAGGAGGCACAGATGTGCCTGTGACCAAGGTATCCCAAGTTCTTGGAAGTAGCTCATTGCCTGTCAATGCAACTCCTAAATCAGAAATACGGTACCCTGAGCAGCAATCCTCTCAGTCCCAGCTTCCACCTGATGTGGAATCTATTTTACTGCAACAAGTGTTGAGTCTTACACCAGAGCAGTTGAGTTCTTTGCCGCCTGAGCAGCAGCAGCAGGTCATTCAGCTCCAGCAGGCTCTCCGGCGAGATCAGATGCAGCCCTCGTAG 1647 0.4681 MATSQHRCVFVGNIPYDASEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLAANVDPQKQAGGPLVHGEAVHHQPIGLHIAITAANAMATTLGGAQSGIQSNQNGLQVQLGLAHDPLTLHLAKMSRSQLNEIISELKAMATQNKELACQLLLSRPQLPKALFQAQIMLGMVTPQVLQMQNLRQVSGQTSQPPVDEGQLGQPAMFQPLSGVPPHAQIKSQPGLVPNIQEAQVSTVRHNPLVPKITAHPKPPLQPRMQLPQHPSNPVVPLGTLPGHSTVPSVRLPSLGSLSIRPPIHLATSTSLNQQMHAPLLHHSGQVGSSGVGQNIRMVHPEASFQPGPSGSSGISQSINREVDRSALEDSIWAKNSTTYSNIPLGSGEKTNVVHESSEQFSRPSKLIKFDDRRSTSFSAGGTDVPVTKVSQVLGSSSLPVNATPKSEIRYPEQQSSQSQLPPDVESILLQQVLSLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3210 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Bisa03g3210 548 MobiDBLite consensus disorder prediction 82 116 - -
Bisa03g3210 548 FunFam Cleavage stimulating factor 64 1 116 - -
Bisa03g3210 548 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 228 IPR025742 -
Bisa03g3210 548 FunFam Related to Cleavage stimulation factor 501 543 - -
Bisa03g3210 548 Pfam Transcription termination and cleavage factor C-terminal 510 542 IPR026896 GO:0031124
Bisa03g3210 548 Gene3D - 503 547 IPR038192 -
Bisa03g3210 548 FunFam Cleavage stimulating factor 64 155 230 - -
Bisa03g3210 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bisa03g3210 548 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Bisa03g3210 548 Gene3D - 1 114 IPR012677 -
Bisa03g3210 548 MobiDBLite consensus disorder prediction 478 505 - -
Bisa03g3210 548 Gene3D - 154 231 - -
Bisa03g3210 548 CDD RRM_CSTF2_RNA15_like 7 83 - -
Bisa03g3210 548 SMART rrm1_1 8 81 IPR000504 GO:0003723
Bisa03g3210 548 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3210 Bisa-ChrBisa03 56392971 56408919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3210 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 3.97e-07 50.8